MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.8 nTPM
HPA:70.8 nTPM
GTEx:27.5 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.2
2219 Male, age 76, both hemispheres 79.9
2586 Male, age 75, left hemisphere 71.2
1830 Male, age 51, unknown 70.1
2828 Female, age 72, unknown 69.7
1833 Male, age 53, unknown 68.6
1827 Male, age 72, unknown 68.1
2666 Male, age 74, left hemisphere 66.6
2411 Female, age 72, unknown 66.3
1870 Female, age 42, unknown 65.6
2019 Male, age 18, unknown 65.6
Dorsal raphe nucleus
nTPM: 66.2
2047 Male, age 72, unknown 69.4
2750 Male, age 76, both hemispheres 68.8
2016 Female, age 72, unknown 64.7
2298 Female, age 72, unknown 64.5
1828 Male, age 53, unknown 63.4
Inferior colliculus
nTPM: 66.5
2849 Male, age 72, unknown 70.4
1848 Female, age 42, unknown 66.2
1890 Male, age 53, unknown 66.0
2097 Female, age 72, unknown 63.4
Median raphe nucleus
nTPM: 69.8
2220 Male, age 76, midline 69.8
Pedunculopontine tegmental nucleus
nTPM: 67.7
2338 Male, age 61, both hemispheres 69.1
1921 Female, age 85, both hemispheres 68.5
2334 Male, age 80, both hemispheres 65.5
Periaquaductal grey, anterior
nTPM: 66.3
1795 Male, age 51, unknown 68.4
1947 Male, age 18, unknown 67.3
2502 Female, age 75, unknown 63.3
Periaquaductal grey, dorsal
nTPM: 67.9
2464 Female, age 72, unknown 70.0
1831 Male, age 72, unknown 69.3
2850 Male, age 76, both hemispheres 67.1
1840 Male, age 53, unknown 65.2
Periaquaductal grey, lateral
nTPM: 70.8
2140 Male, age 76, both hemispheres 71.4
2272 Male, age 74, both hemispheres 70.8
2053 Male, age 18, unknown 70.2
Pretectal area
nTPM: 68.2
2407 Male, age 75, both hemispheres 74.1
2316 Male, age 76, right hemisphere 72.8
2667 Female, age 75, unknown 69.4
2825 Male, age 18, unknown 69.4
2273 Male, age 74, both hemispheres 69.0
2224 Female, age 72, unknown 68.3
1944 Female, age 72, unknown 67.4
1815 Male, age 53, unknown 66.8
1816 Male, age 51, unknown 66.8
2007 Male, age 72, unknown 63.3
1817 Female, age 42, unknown 62.5
Red nucleus
nTPM: 66.7
2823 Male, age 76, right hemisphere 71.6
2584 Male, age 75, left hemisphere 70.9
2588 Male, age 74, left hemisphere 69.4
1904 Male, age 53, unknown 67.7
2769 Male, age 72, unknown 67.6
1865 Male, age 51, unknown 67.3
2227 Male, age 72, unknown 66.8
2725 Female, age 75, unknown 66.6
2785 Male, age 18, unknown 66.2
1954 Female, age 42, unknown 63.6
2503 Female, age 72, unknown 63.3
1821 Female, age 72, unknown 59.8
Substantia nigra
nTPM: 63.1
2583 Male, age 75, right hemisphere 70.8
2590 Female, age 75, unknown 68.5
2665 Male, age 74, both hemispheres 64.3
2699 Male, age 18, unknown 64.0
1941 Male, age 53, unknown 63.8
1851 Male, age 51, unknown 61.0
1889 Female, age 72, unknown 60.8
2409 Female, age 72, unknown 60.8
2241 Male, age 72, unknown 59.6
1916 Female, age 42, unknown 57.5
Superior colliculus
nTPM: 68.1
2087 Female, age 72, unknown 71.2
2664 Male, age 75, both hemispheres 70.4
1913 Female, age 42, unknown 70.2
1895 Male, age 76, right hemisphere 69.1
2261 Male, age 18, unknown 68.2
1796 Male, age 53, unknown 68.1
1995 Male, age 72, unknown 67.9
1839 Male, age 51, unknown 67.6
2587 Male, age 74, left hemisphere 64.4
2668 Female, age 75, unknown 63.9
Ventral tegmental area
nTPM: 64.4
2021 Male, age 53, unknown 69.1
2218 Male, age 76, both hemispheres 64.8
1942 Male, age 51, unknown 64.1
2223 Female, age 72, unknown 64.1
2410 Female, age 72, unknown 62.4
1915 Female, age 42, unknown 61.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.5
Samples: 139

Max nTPM: 92.9
Min nTPM: 8.0
Std nTPM: 12.0
Median nTPM: 25.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 92.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 62.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 59.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 56.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 54.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 52.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 52.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 50.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 50.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 47.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 46.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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