MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1089.9 nTPM
HPA:1089.9 nTPM
GTEx:1549.9 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:37.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1089.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1068.1
2219 Male, age 76, both hemispheres 1097.2
1870 Female, age 42, unknown 1085.7
2666 Male, age 74, left hemisphere 1082.8
1833 Male, age 53, unknown 1076.3
2828 Female, age 72, unknown 1074.5
1830 Male, age 51, unknown 1072.9
2586 Male, age 75, left hemisphere 1062.7
2411 Female, age 72, unknown 1058.7
1827 Male, age 72, unknown 1039.9
2019 Male, age 18, unknown 1030.3
Dorsal raphe nucleus
nTPM: 1054.5
2750 Male, age 76, both hemispheres 1070.2
2298 Female, age 72, unknown 1060.0
1828 Male, age 53, unknown 1058.7
2016 Female, age 72, unknown 1056.6
2047 Male, age 72, unknown 1027.2
Inferior colliculus
nTPM: 1072.1
2849 Male, age 72, unknown 1105.8
1890 Male, age 53, unknown 1076.4
2097 Female, age 72, unknown 1054.0
1848 Female, age 42, unknown 1052.3
Median raphe nucleus
nTPM: 1076.4
2220 Male, age 76, midline 1076.4
Pedunculopontine tegmental nucleus
nTPM: 1077.3
2334 Male, age 80, both hemispheres 1097.5
2338 Male, age 61, both hemispheres 1097.1
1921 Female, age 85, both hemispheres 1037.5
Periaquaductal grey, anterior
nTPM: 1048.9
2502 Female, age 75, unknown 1067.6
1795 Male, age 51, unknown 1056.0
1947 Male, age 18, unknown 1023.0
Periaquaductal grey, dorsal
nTPM: 1064.6
2850 Male, age 76, both hemispheres 1102.0
2464 Female, age 72, unknown 1059.4
1840 Male, age 53, unknown 1051.2
1831 Male, age 72, unknown 1045.7
Periaquaductal grey, lateral
nTPM: 1047.0
2140 Male, age 76, both hemispheres 1056.3
2053 Male, age 18, unknown 1055.4
2272 Male, age 74, both hemispheres 1029.4
Pretectal area
nTPM: 1050.4
2825 Male, age 18, unknown 1082.1
2316 Male, age 76, right hemisphere 1078.6
2224 Female, age 72, unknown 1060.7
1815 Male, age 53, unknown 1055.2
1817 Female, age 42, unknown 1051.8
2667 Female, age 75, unknown 1044.5
2407 Male, age 75, both hemispheres 1044.0
1816 Male, age 51, unknown 1040.4
2007 Male, age 72, unknown 1035.3
1944 Female, age 72, unknown 1032.6
2273 Male, age 74, both hemispheres 1029.7
Red nucleus
nTPM: 1075.1
2503 Female, age 72, unknown 1116.2
2769 Male, age 72, unknown 1085.0
2725 Female, age 75, unknown 1084.1
2823 Male, age 76, right hemisphere 1079.7
2227 Male, age 72, unknown 1079.4
2588 Male, age 74, left hemisphere 1073.7
1865 Male, age 51, unknown 1070.8
1904 Male, age 53, unknown 1066.3
1954 Female, age 42, unknown 1063.5
1821 Female, age 72, unknown 1062.4
2785 Male, age 18, unknown 1060.9
2584 Male, age 75, left hemisphere 1058.6
Substantia nigra
nTPM: 1089.9
2699 Male, age 18, unknown 1176.4
2241 Male, age 72, unknown 1145.8
2665 Male, age 74, both hemispheres 1098.3
1916 Female, age 42, unknown 1093.9
1851 Male, age 51, unknown 1090.6
2409 Female, age 72, unknown 1090.6
1941 Male, age 53, unknown 1060.3
2590 Female, age 75, unknown 1052.3
1889 Female, age 72, unknown 1049.1
2583 Male, age 75, right hemisphere 1041.7
Superior colliculus
nTPM: 1060.7
2587 Male, age 74, left hemisphere 1083.4
1796 Male, age 53, unknown 1076.2
1995 Male, age 72, unknown 1073.8
2668 Female, age 75, unknown 1064.5
1913 Female, age 42, unknown 1060.7
2664 Male, age 75, both hemispheres 1060.7
1839 Male, age 51, unknown 1055.8
2087 Female, age 72, unknown 1052.5
2261 Male, age 18, unknown 1047.8
1895 Male, age 76, right hemisphere 1031.8
Ventral tegmental area
nTPM: 1075.5
2223 Female, age 72, unknown 1104.2
2218 Male, age 76, both hemispheres 1081.1
1915 Female, age 42, unknown 1080.5
2021 Male, age 53, unknown 1071.7
1942 Male, age 51, unknown 1069.4
2410 Female, age 72, unknown 1046.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1549.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1549.9
Samples: 139

Max nTPM: 5436.9
Min nTPM: 496.2
Std nTPM: 721.8
Median nTPM: 1388.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5436.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4131.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4113.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4036.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3638.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3036.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 2847.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2765.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 2549.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2528.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2472.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Midbrain
nTPM: 36.9
Samples: 4

Max nTPM: 44.7
Min nTPM: 31.3
Sample A Female 44.7
Sample B Female 40.0
Sample C Male 31.5
Sample D Male 31.3
Periaqueductal gray
nTPM: 31.3
Samples: 3

Max nTPM: 33.9
Min nTPM: 29.0
Sample B Female 33.9
Sample C Male 31.1
Sample D Male 29.0
Substantia nigra
nTPM: 36.5
Samples: 4

Max nTPM: 45.0
Min nTPM: 31.3
Sample A Female 45.0
Sample B Female 35.6
Sample C Male 33.9
Sample D Male 31.3
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 41.2
Min nTPM: 35.2
Sample A Female 41.2
Sample B Female 35.2
Sample C Male 37.1
Sample D Male 35.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.