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RPL21
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1107.4 nTPM
HPA:1107.4 nTPM
FANTOM5:27.9 Scaled Tags Per Million
Pig:40.2 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 1107.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1089.5
2188 Female, age 91, both hemispheres 1105.7
2301 Female, age 85, both hemispheres 1093.6
2090 Male, age 80, both hemispheres 1089.5
1984 Male, age 76, both hemispheres 1069.3
Dorsal cochlear nucleus
nTPM: 1078.8
2802 Male, age 74, right hemisphere 1097.8
2187 Female, age 91, both hemispheres 1092.2
2378 Male, age 80, both hemispheres 1077.5
2370 Male, age 61, both hemispheres 1067.8
2058 Male, age 76, both hemispheres 1058.5
Dorsal tegmental nucleus
nTPM: 1074.2
2326 Male, age 74, both hemispheres 1089.6
2083 Male, age 80, both hemispheres 1088.8
2358 Male, age 61, both hemispheres 1077.7
1936 Male, age 76, left hemisphere 1040.7
Dorsolateral tegmental area
nTPM: 1076.9
2654 Male, age 80, both hemispheres 1101.2
2751 Female, age 85, both hemispheres 1094.3
2337 Male, age 61, both hemispheres 1077.7
2141 Male, age 76, both hemispheres 1063.7
2360 Male, age 74, both hemispheres 1047.8
Kolliker-Fuse nucleus
nTPM: 1093.8
2315 Male, age 76, right hemisphere 1111.0
2793 Female, age 91, left hemisphere 1104.0
2163 Male, age 80, both hemispheres 1066.4
Lateral lemniscal nuclei
nTPM: 1052.0
2169 Male, age 76, both hemispheres 1074.2
2320 Female, age 91, left hemisphere 1060.9
2746 Female, age 85, left hemisphere 1049.3
2453 Male, age 74, right hemisphere 1045.7
2036 Male, age 80, both hemispheres 1030.1
Lateral parabrachial nucleus
nTPM: 1087.0
2792 Male, age 76, both hemispheres 1146.0
2790 Male, age 61, both hemispheres 1073.3
2013 Male, age 80, both hemispheres 1072.7
2139 Female, age 85, right hemisphere 1056.2
Lateral vestibular nucleus
nTPM: 1079.6
2311 Male, age 80, both hemispheres 1098.3
2184 Male, age 76, both hemispheres 1060.9
Locus coeruleus
nTPM: 1062.6
2788 Male, age 74, unknown 1100.3
2720 Male, age 74, both hemispheres 1088.5
2162 Male, age 80, both hemispheres 1062.5
2123 Female, age 91, both hemispheres 1052.2
2317 Female, age 72, unknown 1047.3
2014 Male, age 55, unknown 1044.1
1980 Male, age 76, both hemispheres 1043.5
Medial olivary nucleus
nTPM: 1107.4
1962 Male, age 76, both hemispheres 1125.6
2851 Male, age 80, both hemispheres 1124.4
2138 Female, age 91, both hemispheres 1113.1
1943 Male, age 61, both hemispheres 1066.4
Medial parabrachial nucleus
nTPM: 1087.6
2170 Female, age 91, both hemispheres 1122.3
2854 Male, age 80, both hemispheres 1103.8
2786 Male, age 76, both hemispheres 1080.7
2463 Female, age 85, right hemisphere 1067.6
2156 Male, age 61, both hemispheres 1063.6
Medial periolivary nuclei
nTPM: 1058.6
2458 Female, age 91, both hemispheres 1070.5
2063 Male, age 76, both hemispheres 1067.5
2081 Male, age 80, both hemispheres 1062.1
2791 Male, age 74, right hemisphere 1053.6
2171 Female, age 85, both hemispheres 1039.4
Motor facial nucleus
nTPM: 1064.9
2697 Female, age 85, both hemispheres 1100.0
2795 Female, age 91, both hemispheres 1088.4
2126 Male, age 61, both hemispheres 1056.8
2062 Male, age 76, both hemispheres 1055.2
2365 Male, age 74, right hemisphere 1048.9
2327 Male, age 80, both hemispheres 1039.9
Motor trigeminal nucleus
nTPM: 1061.3
2309 Male, age 76, both hemispheres 1077.3
2321 Female, age 91, both hemispheres 1070.4
2335 Male, age 61, both hemispheres 1066.3
2560 Male, age 74, both hemispheres 1051.4
2079 Male, age 80, both hemispheres 1041.2
Nuclei of the trapezoid body
nTPM: 1055.1
1983 Male, age 76, both hemispheres 1083.7
2166 Male, age 80, both hemispheres 1064.6
2368 Female, age 91, both hemispheres 1054.7
2159 Male, age 61, both hemispheres 1043.3
2735 Female, age 85, both hemispheres 1028.9
Paramedian reticular nucleus
nTPM: 1068.8
2052 Male, age 76, both hemispheres 1099.1
2313 Male, age 61, both hemispheres 1073.4
2057 Male, age 80, both hemispheres 1055.6
2050 Female, age 85, both hemispheres 1047.1
Pontine nuclei
nTPM: 1054.8
2319 Female, age 91, both hemispheres 1089.4
2454 Male, age 74, left hemisphere 1067.5
1968 Male, age 76, left hemisphere 1058.8
2109 Female, age 72, unknown 1053.5
2787 Female, age 85, both hemispheres 1049.9
2115 Male, age 80, left hemisphere 1047.8
1863 Male, age 55, unknown 1037.0
2727 Male, age 61, right hemisphere 1034.1
Pontine raphe nucleus
nTPM: 1071.8
2853 Male, age 76, midline 1084.3
2122 Female, age 85, midline 1059.4
Posteroventral cochlear nucleus
nTPM: 1095.3
2341 Male, age 80, both hemispheres 1130.4
2135 Female, age 91, both hemispheres 1110.0
2371 Male, age 61, both hemispheres 1091.5
2752 Female, age 85, both hemispheres 1072.7
2070 Male, age 76, both hemispheres 1071.8
Principal sensory trigeminal nucleus
nTPM: 1052.1
2367 Female, age 91, left hemisphere 1071.7
2324 Male, age 76, both hemispheres 1066.1
2158 Male, age 61, both hemispheres 1043.5
2008 Male, age 80, left hemisphere 1027.1
Reticular pontine nucleus, caudal
nTPM: 1071.8
2457 Female, age 91, both hemispheres 1092.7
2092 Male, age 76, both hemispheres 1079.0
2559 Male, age 74, both hemispheres 1077.2
2332 Male, age 80, right hemisphere 1038.1
Reticular pontine nucleus, oral
nTPM: 1072.4
2366 Female, age 91, both hemispheres 1104.7
2167 Male, age 76, both hemispheres 1094.8
2361 Male, age 74, both hemispheres 1058.7
1939 Male, age 80, both hemispheres 1053.3
2012 Female, age 85, both hemispheres 1050.7
Reticulotegmental nucleus
nTPM: 1070.1
2322 Female, age 91, both hemispheres 1077.5
2452 Male, age 74, both hemispheres 1071.8
2333 Male, age 80, both hemispheres 1067.2
2325 Male, age 76, both hemispheres 1064.0
Spinal trigeminal nucleus, oral
nTPM: 1064.8
1978 Male, age 76, both hemispheres 1071.9
2164 Male, age 80, both hemispheres 1067.3
2737 Female, age 85, both hemispheres 1055.1
Subcoeruleus area
nTPM: 1068.1
2369 Female, age 85, left hemisphere 1092.5
2451 Male, age 74, both hemispheres 1090.0
2323 Female, age 91, left hemisphere 1060.7
2089 Male, age 76, left hemisphere 1050.1
1958 Male, age 80, both hemispheres 1047.1
Superior olive
nTPM: 1049.8
2020 Male, age 76, both hemispheres 1075.7
2561 Female, age 91, both hemispheres 1067.3
2329 Male, age 80, right hemisphere 1050.6
2364 Male, age 74, right hemisphere 1032.9
1875 Female, age 85, both hemispheres 1022.3
Superior vestibular nucleus
nTPM: 1072.3
2383 Male, age 74, both hemispheres 1083.1
2015 Male, age 80, both hemispheres 1074.6
2061 Male, age 76, both hemispheres 1059.1
Ventral periolivary nuclei
nTPM: 1063.7
2794 Female, age 91, left hemisphere 1076.5
2023 Male, age 76, both hemispheres 1076.3
2165 Male, age 80, both hemispheres 1060.4
2130 Female, age 85, both hemispheres 1041.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1062.7
2840 Female, age 85, both hemispheres 1089.2
2161 Male, age 80, both hemispheres 1071.1
2359 Male, age 61, both hemispheres 1064.4
2456 Female, age 91, both hemispheres 1059.8
1959 Male, age 76, both hemispheres 1047.2
2449 Male, age 74, both hemispheres 1044.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 27.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 25.2
FF:10182-103D2 60 years, female 29.1
FF:10165-103B3 76 years, female 21.2
Pons
Scaled Tags Per Million: 27.9
FF:10033-101E6 18-54 years, mixed 27.9

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 40.2
Pig sample Sample description nTPM
Pons
nTPM: 40.2
Samples: 4

Max nTPM: 47.3
Min nTPM: 33.4
Sample A Female 37.6
Sample B Female 33.4
Sample C Male 47.3
Sample D Male 42.4

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by the Knut & Alice Wallenberg Foundation.