BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:94.5 nTPM
HPA:94.5 nTPM
GTEx:99.4 nTPM
FANTOM5:587.3 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:782.6 nTPM
Allen mouse:2.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 94.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 92.1
1854 Male, age 80, left hemisphere 94.7
1857 Female, age 85, left hemisphere 93.4
2481 Female, age 94, left hemisphere 93.4
2290 Female, age 72, unknown 91.8
2846 Female, age 79, unknown 91.8
1781 Male, age 74, unknown 91.5
2288 Male, age 75, left hemisphere 91.4
2289 Male, age 61, right hemisphere 88.6
Claustrum
nTPM: 90.7
1956 Male, age 74, unknown 92.1
2198 Male, age 80, both hemispheres 91.9
2491 Male, age 75, both hemispheres 91.5
2196 Female, age 79, unknown 91.3
2392 Female, age 94, both hemispheres 91.1
2568 Male, age 61, both hemispheres 90.5
2292 Female, age 85, both hemispheres 90.3
2284 Female, age 91, both hemispheres 89.7
2645 Female, age 72, unknown 87.9
Globus pallidus, externus
nTPM: 94.0
1996 Male, age 80, right hemisphere 96.7
2772 Female, age 79, unknown 96.7
2395 Male, age 75, both hemispheres 94.4
2567 Female, age 72, unknown 91.3
2646 Male, age 61, right hemisphere 90.9
Globus pallidus, internus
nTPM: 94.5
2483 Female, age 94, right hemisphere 96.0
2037 Male, age 80, right hemisphere 95.7
2287 Male, age 75, right hemisphere 95.7
2778 Female, age 91, both hemispheres 95.7
1818 Male, age 74, unknown 93.2
2111 Female, age 85, right hemisphere 92.7
2566 Female, age 72, unknown 92.3
Nucleus accumbens
nTPM: 92.7
1856 Female, age 91, right hemisphere 95.8
2391 Female, age 94, left hemisphere 94.1
2698 Female, age 72, unknown 93.3
2286 Male, age 75, left hemisphere 92.8
1806 Female, age 85, left hemisphere 91.7
2824 Male, age 61, right hemisphere 91.7
1783 Male, age 74, unknown 91.6
2732 Male, age 80, right hemisphere 90.8
Nucleus basalis of Meynert
nTPM: 91.8
2484 Female, age 94, left hemisphere 92.5
2569 Male, age 61, both hemispheres 91.9
2393 Male, age 80, right hemisphere 91.5
2821 Male, age 75, both hemispheres 91.3
Nucleus of the diagonal band
nTPM: 90.7
1979 Male, age 74, unknown 91.6
2775 Male, age 80, right hemisphere 91.3
1812 Female, age 91, both hemispheres 91.2
2195 Female, age 85, both hemispheres 90.3
2029 Male, age 61, right hemisphere 88.9
Olfactory tubercle
nTPM: 90.4
1846 Male, age 80, right hemisphere 93.1
1998 Female, age 91, both hemispheres 90.8
2487 Female, age 94, left hemisphere 89.1
2856 Male, age 75, right hemisphere 88.6
Putamen
nTPM: 92.1
2482 Female, age 94, left hemisphere 94.1
2466 Female, age 79, unknown 93.1
1937 Female, age 91, right hemisphere 93.0
1829 Male, age 74, unknown 92.1
1838 Male, age 80, right hemisphere 91.4
2647 Male, age 75, left hemisphere 90.8
2489 Female, age 72, unknown 90.5
Septal nuclei
nTPM: 90.9
2031 Female, age 72, unknown 92.8
1960 Male, age 74, unknown 92.4
2199 Male, age 80, right hemisphere 91.8
2394 Male, age 61, left hemisphere 90.4
2059 Female, age 85, both hemispheres 90.2
2009 Female, age 91, both hemispheres 89.5
2629 Female, age 94, right hemisphere 89.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 99.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.2
Samples: 246

Max nTPM: 206.8
Min nTPM: 31.2
Std nTPM: 27.4
Median nTPM: 83.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 206.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 188.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 173.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 171.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 167.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 165.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 162.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 155.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 146.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 145.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 145.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 97.7
Samples: 246

Max nTPM: 236.5
Min nTPM: 30.6
Std nTPM: 34.4
Median nTPM: 92.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 236.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 234.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 230.7
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 209.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 184.8
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 181.5
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 180.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 174.2
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 172.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 172.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 164.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 99.4
Samples: 205

Max nTPM: 210.1
Min nTPM: 26.2
Std nTPM: 31.6
Median nTPM: 96.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 210.1
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 207.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 201.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 193.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 190.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 187.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 187.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 179.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 167.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 161.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 159.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 587.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 311.4
FF:10164-103B2 76 years, female 311.4
Globus pallidus
Scaled Tags Per Million: 587.3
FF:10175-103C4 60 years, female 896.7
FF:10161-103A8 76 years, female 277.8
Nucleus accumbens
Scaled Tags Per Million: 248.8
FF:10037-101F1 23-56 years, mixed 248.8
Putamen
Scaled Tags Per Million: 389.6
FF:10176-103C5 60 years, female 389.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.3
Pig sample Sample description nTPM
Caudate
nTPM: 16.5
Samples: 4

Max nTPM: 17.4
Min nTPM: 15.8
Sample A Female 16.1
Sample B Female 16.7
Sample C Male 17.4
Sample D Male 15.8
Putamen
nTPM: 22.3
Samples: 4

Max nTPM: 28.6
Min nTPM: 17.5
Sample A Female 24.0
Sample B Female 17.5
Sample C Male 28.6
Sample D Male 19.1
Septum
nTPM: 19.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 17.7
Sample A Female 23.6
Sample B Female 18.5
Sample C Male 19.1
Sample D Male 17.7
Ventral pallidum
nTPM: 17.8
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 20.4
Sample C Male 17.2
Sample D Male 16.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 782.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 724.5
Samples: 4

Max nTPM: 788.5
Min nTPM: 693.7
Sample A Male 701.7
Sample B Male 788.5
Sample C Female 693.7
Sample D Female 714.0
Septum
nTPM: 782.7
Samples: 4

Max nTPM: 915.8
Min nTPM: 612.6
Sample A Male 612.6
Sample B Male 915.8
Sample C Female 864.6
Sample D Female 737.6
Ventral forebrain
nTPM: 746.1
Samples: 4

Max nTPM: 999.3
Min nTPM: 630.2
Sample A Male 699.7
Sample B Male 630.2
Sample C Female 999.3
Sample D Female 655.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
69173370 Antisense, RP_050329_01_E03, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 2.9
69173370 Antisense, RP_050329_01_E03, Mouse strain C57BL/6J (56 days, male) 2.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.