MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.1 nTPM
HPA:42.1 nTPM
GTEx:52.4 nTPM
FANTOM5:95.2 Scaled Tags Per Million
Mouse:43.9 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
1830 Male, age 51, unknown 43.3
2019 Male, age 18, unknown 41.7
2828 Female, age 72, unknown 41.3
1833 Male, age 53, unknown 40.6
1870 Female, age 42, unknown 40.2
2666 Male, age 74, left hemisphere 40.0
2586 Male, age 75, left hemisphere 39.9
1827 Male, age 72, unknown 39.0
2411 Female, age 72, unknown 38.7
2219 Male, age 76, both hemispheres 36.9
Dorsal raphe nucleus
nTPM: 36.3
2750 Male, age 76, both hemispheres 40.4
2016 Female, age 72, unknown 37.3
1828 Male, age 53, unknown 36.5
2047 Male, age 72, unknown 34.5
2298 Female, age 72, unknown 33.0
Inferior colliculus
nTPM: 36.2
2849 Male, age 72, unknown 37.7
1890 Male, age 53, unknown 36.8
1848 Female, age 42, unknown 35.5
2097 Female, age 72, unknown 34.9
Median raphe nucleus
nTPM: 36.8
2220 Male, age 76, midline 36.8
Pedunculopontine tegmental nucleus
nTPM: 40.6
2338 Male, age 61, both hemispheres 47.0
2334 Male, age 80, both hemispheres 37.5
1921 Female, age 85, both hemispheres 37.2
Periaquaductal grey, anterior
nTPM: 37.2
1947 Male, age 18, unknown 39.4
1795 Male, age 51, unknown 36.7
2502 Female, age 75, unknown 35.5
Periaquaductal grey, dorsal
nTPM: 36.0
2850 Male, age 76, both hemispheres 38.2
2464 Female, age 72, unknown 36.1
1831 Male, age 72, unknown 35.8
1840 Male, age 53, unknown 34.0
Periaquaductal grey, lateral
nTPM: 37.4
2140 Male, age 76, both hemispheres 38.9
2272 Male, age 74, both hemispheres 37.5
2053 Male, age 18, unknown 35.7
Pretectal area
nTPM: 38.3
2667 Female, age 75, unknown 42.0
2407 Male, age 75, both hemispheres 41.6
2316 Male, age 76, right hemisphere 40.3
1815 Male, age 53, unknown 38.8
2007 Male, age 72, unknown 38.5
1817 Female, age 42, unknown 38.3
1944 Female, age 72, unknown 37.2
2825 Male, age 18, unknown 36.7
1816 Male, age 51, unknown 36.2
2273 Male, age 74, both hemispheres 36.2
2224 Female, age 72, unknown 35.4
Red nucleus
nTPM: 42.1
1904 Male, age 53, unknown 44.5
2588 Male, age 74, left hemisphere 43.3
2823 Male, age 76, right hemisphere 43.1
2227 Male, age 72, unknown 42.9
2503 Female, age 72, unknown 42.8
2769 Male, age 72, unknown 42.4
1954 Female, age 42, unknown 42.1
1865 Male, age 51, unknown 42.0
2785 Male, age 18, unknown 41.9
2584 Male, age 75, left hemisphere 41.3
2725 Female, age 75, unknown 39.3
1821 Female, age 72, unknown 39.1
Substantia nigra
nTPM: 39.1
2583 Male, age 75, right hemisphere 42.0
2699 Male, age 18, unknown 40.1
2590 Female, age 75, unknown 40.0
2409 Female, age 72, unknown 39.6
1851 Male, age 51, unknown 39.0
1941 Male, age 53, unknown 39.0
1916 Female, age 42, unknown 38.7
2665 Male, age 74, both hemispheres 38.2
2241 Male, age 72, unknown 37.4
1889 Female, age 72, unknown 37.3
Superior colliculus
nTPM: 38.3
1913 Female, age 42, unknown 41.1
1995 Male, age 72, unknown 40.3
1895 Male, age 76, right hemisphere 39.1
2664 Male, age 75, both hemispheres 38.7
2668 Female, age 75, unknown 38.1
2087 Female, age 72, unknown 37.9
1839 Male, age 51, unknown 37.5
2261 Male, age 18, unknown 37.0
2587 Male, age 74, left hemisphere 36.6
1796 Male, age 53, unknown 36.3
Ventral tegmental area
nTPM: 37.1
2223 Female, age 72, unknown 37.8
1942 Male, age 51, unknown 37.7
2021 Male, age 53, unknown 37.3
2218 Male, age 76, both hemispheres 37.3
2410 Female, age 72, unknown 37.1
1915 Female, age 42, unknown 35.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.4
Samples: 139

Max nTPM: 101.4
Min nTPM: 27.2
Std nTPM: 12.9
Median nTPM: 51.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 101.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 91.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 91.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 87.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 87.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 80.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 79.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 76.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 74.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 72.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.2
FF:10158-103A5 76 years, female 95.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.9
Samples: 4

Max nTPM: 49.6
Min nTPM: 39.6
Sample A Male 49.6
Sample B Male 39.6
Sample C Female 43.9
Sample D Female 42.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
70302288 Antisense, RP_050607_04_B01, Mouse strain C57BL/6J (56 days, male) 5.5

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