BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:43.6 nTPM
HPA:43.6 nTPM
GTEx:40.5 nTPM
FANTOM5:101.4 Scaled Tags Per Million
Mouse:41.4 nTPM
Allen mouse:4.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041019Antibody HPA042033
Glial cells LowNot detected
Neuronal cells HighMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.6
2481 Female, age 94, left hemisphere 35.9
1854 Male, age 80, left hemisphere 35.4
1781 Male, age 74, unknown 34.8
2289 Male, age 61, right hemisphere 34.4
2288 Male, age 75, left hemisphere 33.6
1857 Female, age 85, left hemisphere 32.3
2290 Female, age 72, unknown 32.3
2846 Female, age 79, unknown 30.4
Claustrum
nTPM: 38.8
2292 Female, age 85, both hemispheres 42.7
2196 Female, age 79, unknown 40.6
1956 Male, age 74, unknown 40.4
2645 Female, age 72, unknown 39.8
2568 Male, age 61, both hemispheres 39.2
2491 Male, age 75, both hemispheres 38.4
2284 Female, age 91, both hemispheres 37.0
2392 Female, age 94, both hemispheres 35.5
2198 Male, age 80, both hemispheres 35.4
Globus pallidus, externus
nTPM: 42.6
2567 Female, age 72, unknown 54.7
2646 Male, age 61, right hemisphere 44.3
1996 Male, age 80, right hemisphere 38.9
2395 Male, age 75, both hemispheres 37.6
2772 Female, age 79, unknown 37.3
Globus pallidus, internus
nTPM: 43.6
2566 Female, age 72, unknown 50.0
2111 Female, age 85, right hemisphere 47.3
1818 Male, age 74, unknown 45.9
2778 Female, age 91, both hemispheres 44.6
2037 Male, age 80, right hemisphere 42.2
2483 Female, age 94, right hemisphere 38.3
2287 Male, age 75, right hemisphere 37.0
Nucleus accumbens
nTPM: 35.4
2732 Male, age 80, right hemisphere 38.4
2698 Female, age 72, unknown 37.3
2824 Male, age 61, right hemisphere 36.7
2391 Female, age 94, left hemisphere 36.6
1806 Female, age 85, left hemisphere 34.4
2286 Male, age 75, left hemisphere 34.1
1783 Male, age 74, unknown 33.6
1856 Female, age 91, right hemisphere 32.2
Nucleus basalis of Meynert
nTPM: 38.4
2821 Male, age 75, both hemispheres 40.7
2569 Male, age 61, both hemispheres 40.2
2393 Male, age 80, right hemisphere 36.5
2484 Female, age 94, left hemisphere 36.2
Nucleus of the diagonal band
nTPM: 35.2
2029 Male, age 61, right hemisphere 36.7
2775 Male, age 80, right hemisphere 35.6
1979 Male, age 74, unknown 35.4
2195 Female, age 85, both hemispheres 35.0
1812 Female, age 91, both hemispheres 33.4
Olfactory tubercle
nTPM: 36.8
2856 Male, age 75, right hemisphere 39.6
2487 Female, age 94, left hemisphere 38.5
1846 Male, age 80, right hemisphere 35.2
1998 Female, age 91, both hemispheres 34.0
Putamen
nTPM: 36.8
2647 Male, age 75, left hemisphere 46.3
2489 Female, age 72, unknown 40.3
2482 Female, age 94, left hemisphere 35.5
1829 Male, age 74, unknown 35.3
1838 Male, age 80, right hemisphere 34.5
1937 Female, age 91, right hemisphere 33.5
2466 Female, age 79, unknown 32.5
Septal nuclei
nTPM: 36.0
2629 Female, age 94, right hemisphere 39.6
2059 Female, age 85, both hemispheres 38.0
2199 Male, age 80, right hemisphere 37.4
2394 Male, age 61, left hemisphere 36.3
2009 Female, age 91, both hemispheres 35.9
1960 Male, age 74, unknown 32.8
2031 Female, age 72, unknown 32.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.8
Samples: 246

Max nTPM: 79.6
Min nTPM: 15.1
Std nTPM: 8.8
Median nTPM: 39.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 79.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 68.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 66.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 66.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 61.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 60.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 59.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 59.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 59.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 56.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 54.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.4
Samples: 246

Max nTPM: 64.1
Min nTPM: 17.2
Std nTPM: 7.4
Median nTPM: 39.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 64.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 62.7
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 62.0
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 60.0
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 58.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 58.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 57.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 57.1
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 56.5
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 53.3
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 52.9
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Brain - Putamen (basal ganglia)
Average nTPM: 40.5
Samples: 205

Max nTPM: 65.9
Min nTPM: 20.7
Std nTPM: 7.9
Median nTPM: 39.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 65.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 64.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 62.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 60.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 59.2
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 58.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 56.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 56.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 55.9
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 55.9
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 55.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 101.4
FF:10164-103B2 76 years, female 101.4
Globus pallidus
Scaled Tags Per Million: 70.3
FF:10161-103A8 76 years, female 88.5
FF:10175-103C4 60 years, female 52.0
Nucleus accumbens
Scaled Tags Per Million: 56.6
FF:10037-101F1 23-56 years, mixed 56.6
Putamen
Scaled Tags Per Million: 88.3
FF:10176-103C5 60 years, female 88.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.0
Samples: 4

Max nTPM: 61.1
Min nTPM: 31.7
Sample A Male 36.9
Sample B Male 61.1
Sample C Female 31.7
Sample D Female 34.3
Septum
nTPM: 41.4
Samples: 4

Max nTPM: 46.9
Min nTPM: 39.1
Sample A Male 46.9
Sample B Male 39.1
Sample C Female 40.5
Sample D Female 39.2
Ventral forebrain
nTPM: 40.6
Samples: 4

Max nTPM: 48.6
Min nTPM: 33.0
Sample A Male 42.7
Sample B Male 38.2
Sample C Female 33.0
Sample D Female 48.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.3
70302288 Antisense, RP_050607_04_B01, Mouse strain C57BL/6J (56 days, male) 3.3
Pallidum
Expression energy: 4.5
70302288 Antisense, RP_050607_04_B01, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

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