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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1054.1 nTPM
HPA:1054.1 nTPM
GTEx:1221.7 nTPM
FANTOM5:236.9 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1054.1
Sample id Sample description nTPM
Amygdala
nTPM: 1045.5
2695 Female, age 67, right hemisphere 1081.1
2514 Male, age 75, right hemisphere 1059.8
2517 Female, age 94, left hemisphere 1043.1
2814 Male, age 76, right hemisphere 1021.7
1987 Female, age 91, left hemisphere 1021.6
Basal amygdala
nTPM: 1021.4
2827 Female, age 67, right hemisphere 1078.2
2609 Male, age 75, right hemisphere 1046.7
2685 Female, age 94, left hemisphere 1016.5
2110 Male, age 80, left hemisphere 1015.5
2243 Female, age 91, right hemisphere 991.9
1955 Male, age 76, both hemispheres 979.9
Central amygdala
nTPM: 1041.8
2826 Female, age 94, left hemisphere 1150.9
2515 Male, age 75, right hemisphere 1069.0
1905 Male, age 76, both hemispheres 1006.7
2239 Male, age 80, left hemisphere 1003.0
2701 Female, age 91, right hemisphere 979.2
Corticomedial amygdala
nTPM: 1012.5
2428 Male, age 75, right hemisphere 1060.5
2535 Female, age 67, right hemisphere 1025.3
2829 Male, age 80, left hemisphere 1005.7
2429 Female, age 94, left hemisphere 999.3
2242 Female, age 91, right hemisphere 993.7
2240 Male, age 76, both hemispheres 990.3
Lateral amygdala
nTPM: 1054.1
2830 Female, age 67, right hemisphere 1125.5
2516 Male, age 75, right hemisphere 1103.2
2534 Female, age 94, left hemisphere 1091.1
2256 Male, age 80, left hemisphere 1025.1
2255 Female, age 91, right hemisphere 992.7
1883 Male, age 76, both hemispheres 986.7
Stria terminalis, bed nucleus
nTPM: 986.0
1974 Female, age 91, both hemispheres 1006.7
2201 Male, age 74, unknown 981.0
2486 Female, age 94, both hemispheres 970.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1221.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1221.7
Samples: 152

Max nTPM: 4019.2
Min nTPM: 548.7
Std nTPM: 550.5
Median nTPM: 1099.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 4019.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3465.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2946.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2772.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2723.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2657.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2597.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2500.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2412.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2239.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2031.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1976.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1974.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1929.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1916.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1885.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1814.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1754.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1740.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1726.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1697.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1660.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1657.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1624.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1592.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1587.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1561.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1561.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1524.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1499.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1475.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1473.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1460.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1434.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1380.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1378.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1370.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1368.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1341.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1329.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1318.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1308.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1289.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1288.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1282.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1276.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1268.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1261.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1256.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1255.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1236.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1228.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1214.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1213.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1212.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1207.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1197.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1195.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1192.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1182.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1165.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1163.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1159.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1155.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1148.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1144.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1143.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1143.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1141.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1135.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1128.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1125.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1119.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1113.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1104.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1099.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1098.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1096.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1094.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1092.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1090.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1063.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1062.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1057.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1035.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1016.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1014.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1009.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 994.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 990.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 984.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 980.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 979.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 973.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 973.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 970.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 966.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 962.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 960.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 959.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 951.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 939.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 939.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 935.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 933.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 920.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 912.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 908.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 901.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 900.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 890.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 883.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 872.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 871.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 860.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 856.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 852.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 840.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 838.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 833.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 828.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 825.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 825.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 819.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 806.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 786.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 781.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 776.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 773.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 765.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 758.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 751.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 750.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 743.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 740.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 736.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 735.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 728.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 724.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 709.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 699.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 698.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 696.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 678.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 675.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 670.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 669.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 669.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 655.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 638.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 620.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 548.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 236.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 236.9
FF:10151-102I7 76 years, female 236.9

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