MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1024.2 nTPM
HPA:1024.2 nTPM
GTEx:1057.1 nTPM
FANTOM5:285.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1024.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1017.0
2586 Male, age 75, left hemisphere 1045.2
2666 Male, age 74, left hemisphere 1042.7
2411 Female, age 72, unknown 1031.6
2019 Male, age 18, unknown 1025.7
1870 Female, age 42, unknown 1018.1
2828 Female, age 72, unknown 1009.4
1827 Male, age 72, unknown 1009.2
2219 Male, age 76, both hemispheres 1000.8
1833 Male, age 53, unknown 998.3
1830 Male, age 51, unknown 989.4
Dorsal raphe nucleus
nTPM: 1010.6
2298 Female, age 72, unknown 1043.3
2750 Male, age 76, both hemispheres 1014.2
2016 Female, age 72, unknown 1007.4
1828 Male, age 53, unknown 1000.7
2047 Male, age 72, unknown 987.5
Inferior colliculus
nTPM: 1012.1
2097 Female, age 72, unknown 1029.8
1890 Male, age 53, unknown 1028.1
2849 Male, age 72, unknown 997.0
1848 Female, age 42, unknown 993.7
Median raphe nucleus
nTPM: 997.3
2220 Male, age 76, midline 997.3
Pedunculopontine tegmental nucleus
nTPM: 1018.1
2338 Male, age 61, both hemispheres 1032.9
2334 Male, age 80, both hemispheres 1031.6
1921 Female, age 85, both hemispheres 989.9
Periaquaductal grey, anterior
nTPM: 1024.2
2502 Female, age 75, unknown 1060.7
1795 Male, age 51, unknown 1016.9
1947 Male, age 18, unknown 995.1
Periaquaductal grey, dorsal
nTPM: 1006.8
1840 Male, age 53, unknown 1016.5
2464 Female, age 72, unknown 1013.3
1831 Male, age 72, unknown 1003.5
2850 Male, age 76, both hemispheres 993.8
Periaquaductal grey, lateral
nTPM: 990.6
2053 Male, age 18, unknown 1005.8
2140 Male, age 76, both hemispheres 994.5
2272 Male, age 74, both hemispheres 971.4
Pretectal area
nTPM: 1012.2
1816 Male, age 51, unknown 1046.4
1817 Female, age 42, unknown 1032.7
2007 Male, age 72, unknown 1030.5
2316 Male, age 76, right hemisphere 1024.2
2224 Female, age 72, unknown 1021.3
1815 Male, age 53, unknown 1017.5
1944 Female, age 72, unknown 1003.9
2825 Male, age 18, unknown 1002.3
2407 Male, age 75, both hemispheres 988.6
2667 Female, age 75, unknown 988.4
2273 Male, age 74, both hemispheres 978.0
Red nucleus
nTPM: 1021.1
2503 Female, age 72, unknown 1068.1
2227 Male, age 72, unknown 1026.9
2785 Male, age 18, unknown 1026.2
1904 Male, age 53, unknown 1026.0
2769 Male, age 72, unknown 1024.3
1865 Male, age 51, unknown 1024.1
1821 Female, age 72, unknown 1023.8
2584 Male, age 75, left hemisphere 1019.8
2725 Female, age 75, unknown 1018.6
2588 Male, age 74, left hemisphere 1011.7
1954 Female, age 42, unknown 996.0
2823 Male, age 76, right hemisphere 987.5
Substantia nigra
nTPM: 1022.1
1851 Male, age 51, unknown 1054.6
2665 Male, age 74, both hemispheres 1044.3
2241 Male, age 72, unknown 1034.8
2409 Female, age 72, unknown 1032.4
2699 Male, age 18, unknown 1024.1
2590 Female, age 75, unknown 1015.6
1889 Female, age 72, unknown 1011.9
1916 Female, age 42, unknown 1007.6
2583 Male, age 75, right hemisphere 1000.4
1941 Male, age 53, unknown 995.3
Superior colliculus
nTPM: 1020.0
1913 Female, age 42, unknown 1039.5
2587 Male, age 74, left hemisphere 1035.8
1995 Male, age 72, unknown 1027.5
1796 Male, age 53, unknown 1027.0
2664 Male, age 75, both hemispheres 1022.6
2261 Male, age 18, unknown 1020.0
2087 Female, age 72, unknown 1019.8
2668 Female, age 75, unknown 1017.9
1839 Male, age 51, unknown 998.5
1895 Male, age 76, right hemisphere 991.9
Ventral tegmental area
nTPM: 1019.9
1915 Female, age 42, unknown 1040.5
2021 Male, age 53, unknown 1028.5
2410 Female, age 72, unknown 1022.7
2223 Female, age 72, unknown 1021.2
1942 Male, age 51, unknown 1009.1
2218 Male, age 76, both hemispheres 997.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1057.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1057.1
Samples: 139

Max nTPM: 3198.6
Min nTPM: 432.0
Std nTPM: 428.5
Median nTPM: 991.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3198.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2657.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2537.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2340.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2121.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2029.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1980.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1791.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1737.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1664.7
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1652.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 285.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 285.6
FF:10158-103A5 76 years, female 285.6

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