MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:72.8 nTPM
HPA:72.8 nTPM
GTEx:76.7 nTPM
FANTOM5:92.0 Scaled Tags Per Million
Pig:31.8 nTPM
Mouse:91.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.6
2411 Female, age 72, unknown 72.4
1870 Female, age 42, unknown 71.2
1827 Male, age 72, unknown 70.5
2019 Male, age 18, unknown 67.7
1833 Male, age 53, unknown 67.4
1830 Male, age 51, unknown 66.1
2219 Male, age 76, both hemispheres 66.0
2828 Female, age 72, unknown 66.0
2586 Male, age 75, left hemisphere 65.0
2666 Male, age 74, left hemisphere 64.1
Dorsal raphe nucleus
nTPM: 71.8
2298 Female, age 72, unknown 78.2
1828 Male, age 53, unknown 71.6
2750 Male, age 76, both hemispheres 70.4
2047 Male, age 72, unknown 69.8
2016 Female, age 72, unknown 68.9
Inferior colliculus
nTPM: 72.8
2097 Female, age 72, unknown 78.8
1848 Female, age 42, unknown 73.5
1890 Male, age 53, unknown 71.2
2849 Male, age 72, unknown 67.6
Median raphe nucleus
nTPM: 71.3
2220 Male, age 76, midline 71.3
Pedunculopontine tegmental nucleus
nTPM: 71.7
2334 Male, age 80, both hemispheres 73.0
1921 Female, age 85, both hemispheres 72.4
2338 Male, age 61, both hemispheres 69.8
Periaquaductal grey, anterior
nTPM: 69.3
2502 Female, age 75, unknown 71.3
1947 Male, age 18, unknown 69.7
1795 Male, age 51, unknown 67.0
Periaquaductal grey, dorsal
nTPM: 70.1
1840 Male, age 53, unknown 71.4
2850 Male, age 76, both hemispheres 70.7
2464 Female, age 72, unknown 70.1
1831 Male, age 72, unknown 68.2
Periaquaductal grey, lateral
nTPM: 69.5
2272 Male, age 74, both hemispheres 70.7
2053 Male, age 18, unknown 69.4
2140 Male, age 76, both hemispheres 68.2
Pretectal area
nTPM: 70.5
1817 Female, age 42, unknown 73.8
2007 Male, age 72, unknown 73.8
2224 Female, age 72, unknown 73.7
2273 Male, age 74, both hemispheres 72.8
1816 Male, age 51, unknown 71.6
1944 Female, age 72, unknown 71.4
2667 Female, age 75, unknown 70.9
1815 Male, age 53, unknown 69.9
2825 Male, age 18, unknown 67.8
2316 Male, age 76, right hemisphere 67.3
2407 Male, age 75, both hemispheres 62.4
Red nucleus
nTPM: 67.2
1821 Female, age 72, unknown 73.1
1954 Female, age 42, unknown 70.6
2503 Female, age 72, unknown 68.3
1865 Male, age 51, unknown 67.9
2785 Male, age 18, unknown 67.8
2725 Female, age 75, unknown 67.2
2227 Male, age 72, unknown 67.1
1904 Male, age 53, unknown 66.8
2823 Male, age 76, right hemisphere 66.8
2769 Male, age 72, unknown 66.6
2588 Male, age 74, left hemisphere 63.3
2584 Male, age 75, left hemisphere 60.3
Substantia nigra
nTPM: 71.0
2241 Male, age 72, unknown 79.4
1889 Female, age 72, unknown 74.6
1916 Female, age 42, unknown 74.5
1941 Male, age 53, unknown 74.5
1851 Male, age 51, unknown 71.5
2699 Male, age 18, unknown 69.3
2590 Female, age 75, unknown 67.7
2665 Male, age 74, both hemispheres 67.5
2409 Female, age 72, unknown 67.4
2583 Male, age 75, right hemisphere 63.4
Superior colliculus
nTPM: 68.0
1895 Male, age 76, right hemisphere 71.0
2261 Male, age 18, unknown 69.9
2587 Male, age 74, left hemisphere 69.7
2087 Female, age 72, unknown 69.3
1839 Male, age 51, unknown 69.2
1796 Male, age 53, unknown 69.1
2668 Female, age 75, unknown 68.0
1913 Female, age 42, unknown 65.5
2664 Male, age 75, both hemispheres 65.2
1995 Male, age 72, unknown 63.7
Ventral tegmental area
nTPM: 71.0
2410 Female, age 72, unknown 74.2
1915 Female, age 42, unknown 72.2
2218 Male, age 76, both hemispheres 71.9
2223 Female, age 72, unknown 70.6
1942 Male, age 51, unknown 70.3
2021 Male, age 53, unknown 66.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.7
Samples: 139

Max nTPM: 217.0
Min nTPM: 45.5
Std nTPM: 18.7
Median nTPM: 75.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 217.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 123.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 121.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 117.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 110.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 108.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 107.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 103.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 103.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 102.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 101.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.0
FF:10158-103A5 76 years, female 92.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.8
Pig sample Sample description nTPM
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 38.7
Min nTPM: 26.9
Sample A Female 38.7
Sample B Female 30.1
Sample C Male 31.5
Sample D Male 26.9
Periaqueductal gray
nTPM: 28.7
Samples: 3

Max nTPM: 31.4
Min nTPM: 26.7
Sample B Female 28.0
Sample C Male 31.4
Sample D Male 26.7
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 40.3
Min nTPM: 21.1
Sample A Female 40.3
Sample B Female 26.7
Sample C Male 32.0
Sample D Male 21.1
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 35.1
Min nTPM: 26.4
Sample A Female 35.1
Sample B Female 26.4
Sample C Male 32.1
Sample D Male 27.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.7
Samples: 4

Max nTPM: 99.0
Min nTPM: 85.2
Sample A Male 85.2
Sample B Male 95.9
Sample C Female 86.7
Sample D Female 99.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.