BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.9 nTPM
HPA:44.9 nTPM
GTEx:13.3 nTPM
FANTOM5:143.8 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:101.5 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.6
1781 Male, age 74, unknown 31.1
2481 Female, age 94, left hemisphere 18.4
2288 Male, age 75, left hemisphere 17.5
2846 Female, age 79, unknown 13.4
2290 Female, age 72, unknown 11.5
1857 Female, age 85, left hemisphere 11.1
2289 Male, age 61, right hemisphere 11.0
1854 Male, age 80, left hemisphere 10.9
Claustrum
nTPM: 29.6
1956 Male, age 74, unknown 42.1
2645 Female, age 72, unknown 33.2
2491 Male, age 75, both hemispheres 32.9
2392 Female, age 94, both hemispheres 31.1
2198 Male, age 80, both hemispheres 30.7
2284 Female, age 91, both hemispheres 27.3
2196 Female, age 79, unknown 25.6
2568 Male, age 61, both hemispheres 25.0
2292 Female, age 85, both hemispheres 18.1
Globus pallidus, externus
nTPM: 12.2
2395 Male, age 75, both hemispheres 16.2
1996 Male, age 80, right hemisphere 11.8
2646 Male, age 61, right hemisphere 11.4
2772 Female, age 79, unknown 11.4
2567 Female, age 72, unknown 10.1
Globus pallidus, internus
nTPM: 13.2
2287 Male, age 75, right hemisphere 18.6
2483 Female, age 94, right hemisphere 15.5
2778 Female, age 91, both hemispheres 12.9
2566 Female, age 72, unknown 12.0
2037 Male, age 80, right hemisphere 11.5
1818 Male, age 74, unknown 11.2
2111 Female, age 85, right hemisphere 10.6
Nucleus accumbens
nTPM: 13.9
2286 Male, age 75, left hemisphere 19.7
2391 Female, age 94, left hemisphere 17.6
1783 Male, age 74, unknown 15.7
1856 Female, age 91, right hemisphere 13.2
2824 Male, age 61, right hemisphere 12.1
2698 Female, age 72, unknown 11.6
1806 Female, age 85, left hemisphere 10.8
2732 Male, age 80, right hemisphere 10.5
Nucleus basalis of Meynert
nTPM: 16.9
2821 Male, age 75, both hemispheres 24.6
2484 Female, age 94, left hemisphere 19.4
2393 Male, age 80, right hemisphere 12.0
2569 Male, age 61, both hemispheres 11.6
Nucleus of the diagonal band
nTPM: 44.9
2775 Male, age 80, right hemisphere 57.0
2029 Male, age 61, right hemisphere 56.3
1812 Female, age 91, both hemispheres 55.1
2195 Female, age 85, both hemispheres 44.8
1979 Male, age 74, unknown 11.0
Olfactory tubercle
nTPM: 44.1
1998 Female, age 91, both hemispheres 52.3
2487 Female, age 94, left hemisphere 43.2
1846 Male, age 80, right hemisphere 42.5
2856 Male, age 75, right hemisphere 38.4
Putamen
nTPM: 13.5
2482 Female, age 94, left hemisphere 17.6
2647 Male, age 75, left hemisphere 16.6
1937 Female, age 91, right hemisphere 13.4
2466 Female, age 79, unknown 12.7
1838 Male, age 80, right hemisphere 11.7
1829 Male, age 74, unknown 11.3
2489 Female, age 72, unknown 10.9
Septal nuclei
nTPM: 38.1
2031 Female, age 72, unknown 67.4
1960 Male, age 74, unknown 63.6
2009 Female, age 91, both hemispheres 42.4
2629 Female, age 94, right hemisphere 40.9
2059 Female, age 85, both hemispheres 24.0
2394 Male, age 61, left hemisphere 15.7
2199 Male, age 80, right hemisphere 12.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.8
Samples: 246

Max nTPM: 250.0
Min nTPM: 4.3
Std nTPM: 18.5
Median nTPM: 10.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 250.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 161.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 59.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 25.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 24.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 24.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 22.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 22.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 22.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 21.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 20.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.3
Samples: 246

Max nTPM: 62.3
Min nTPM: 4.1
Std nTPM: 7.8
Median nTPM: 11.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 62.3
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 60.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 48.2
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 41.7
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 38.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 35.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 34.0
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 33.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 31.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 29.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 28.7
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Brain - Putamen (basal ganglia)
Average nTPM: 12.5
Samples: 205

Max nTPM: 59.1
Min nTPM: 4.5
Std nTPM: 6.6
Median nTPM: 10.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 59.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 48.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 45.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 38.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 34.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 28.5
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 24.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 24.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 23.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 22.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 21.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.9
FF:10164-103B2 76 years, female 11.9
Globus pallidus
Scaled Tags Per Million: 5.7
FF:10161-103A8 76 years, female 8.3
FF:10175-103C4 60 years, female 3.1
Nucleus accumbens
Scaled Tags Per Million: 143.8
FF:10037-101F1 23-56 years, mixed 143.8
Putamen
Scaled Tags Per Million: 7.5
FF:10176-103C5 60 years, female 7.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.3
Pig sample Sample description nTPM
Caudate
nTPM: 3.1
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.2
Sample A Female 4.2
Sample B Female 2.4
Sample C Male 3.6
Sample D Male 2.2
Putamen
nTPM: 4.6
Samples: 4

Max nTPM: 5.5
Min nTPM: 2.6
Sample A Female 5.1
Sample B Female 2.6
Sample C Male 5.5
Sample D Male 5.2
Septum
nTPM: 10.3
Samples: 4

Max nTPM: 20.5
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 8.1
Sample C Male 20.5
Sample D Male 6.8
Ventral pallidum
nTPM: 8.3
Samples: 4

Max nTPM: 18.5
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 5.1
Sample C Male 18.5
Sample D Male 4.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 101.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.5
Samples: 4

Max nTPM: 45.1
Min nTPM: 5.2
Sample A Male 7.3
Sample B Male 5.2
Sample C Female 45.1
Sample D Female 32.4
Septum
nTPM: 67.7
Samples: 4

Max nTPM: 92.5
Min nTPM: 39.4
Sample A Male 70.6
Sample B Male 68.3
Sample C Female 92.5
Sample D Female 39.4
Ventral forebrain
nTPM: 101.5
Samples: 4

Max nTPM: 114.7
Min nTPM: 90.5
Sample A Male 102.3
Sample B Male 98.5
Sample C Female 114.7
Sample D Female 90.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
74427071 Antisense, RP_051206_02_H12, Mouse strain C57BL/6J (56 days, male) 2.3
75147760 Antisense, RP_051206_02_H12, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 2.5
74427071 Antisense, RP_051206_02_H12, Mouse strain C57BL/6J (56 days, male) 2.5
75147760 Antisense, RP_051206_02_H12, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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