MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA:29.9 nTPM
GTEx:24.8 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:87.6 nTPM
Mouse:150.7 nTPM
Allen mouse:11.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.0
1827 Male, age 72, unknown 28.4
2019 Male, age 18, unknown 24.5
2666 Male, age 74, left hemisphere 23.4
2828 Female, age 72, unknown 22.1
2219 Male, age 76, both hemispheres 22.0
2586 Male, age 75, left hemisphere 18.2
2411 Female, age 72, unknown 18.0
1870 Female, age 42, unknown 17.8
1830 Male, age 51, unknown 13.1
1833 Male, age 53, unknown 12.2
Dorsal raphe nucleus
nTPM: 12.8
1828 Male, age 53, unknown 14.7
2298 Female, age 72, unknown 14.1
2750 Male, age 76, both hemispheres 13.1
2016 Female, age 72, unknown 12.6
2047 Male, age 72, unknown 9.4
Inferior colliculus
nTPM: 23.6
2097 Female, age 72, unknown 27.7
1848 Female, age 42, unknown 23.9
1890 Male, age 53, unknown 21.8
2849 Male, age 72, unknown 21.1
Median raphe nucleus
nTPM: 14.2
2220 Male, age 76, midline 14.2
Pedunculopontine tegmental nucleus
nTPM: 21.1
2334 Male, age 80, both hemispheres 23.1
1921 Female, age 85, both hemispheres 22.3
2338 Male, age 61, both hemispheres 18.0
Periaquaductal grey, anterior
nTPM: 22.2
1795 Male, age 51, unknown 32.3
2502 Female, age 75, unknown 17.2
1947 Male, age 18, unknown 17.0
Periaquaductal grey, dorsal
nTPM: 21.6
1831 Male, age 72, unknown 37.6
1840 Male, age 53, unknown 17.9
2464 Female, age 72, unknown 16.3
2850 Male, age 76, both hemispheres 14.4
Periaquaductal grey, lateral
nTPM: 18.9
2053 Male, age 18, unknown 25.5
2272 Male, age 74, both hemispheres 16.3
2140 Male, age 76, both hemispheres 15.1
Pretectal area
nTPM: 29.9
1816 Male, age 51, unknown 59.7
1944 Female, age 72, unknown 45.7
1817 Female, age 42, unknown 35.5
2007 Male, age 72, unknown 35.3
2667 Female, age 75, unknown 32.7
1815 Male, age 53, unknown 30.6
2224 Female, age 72, unknown 20.1
2273 Male, age 74, both hemispheres 18.1
2407 Male, age 75, both hemispheres 18.0
2825 Male, age 18, unknown 18.0
2316 Male, age 76, right hemisphere 15.4
Red nucleus
nTPM: 19.6
2785 Male, age 18, unknown 23.8
1954 Female, age 42, unknown 22.0
1821 Female, age 72, unknown 21.6
2588 Male, age 74, left hemisphere 20.4
2584 Male, age 75, left hemisphere 19.5
2725 Female, age 75, unknown 19.5
2823 Male, age 76, right hemisphere 19.2
1865 Male, age 51, unknown 19.0
1904 Male, age 53, unknown 17.8
2503 Female, age 72, unknown 17.6
2227 Male, age 72, unknown 17.3
2769 Male, age 72, unknown 17.0
Substantia nigra
nTPM: 18.6
1889 Female, age 72, unknown 29.2
1941 Male, age 53, unknown 26.8
2665 Male, age 74, both hemispheres 25.2
2583 Male, age 75, right hemisphere 17.4
1916 Female, age 42, unknown 17.1
1851 Male, age 51, unknown 15.5
2590 Female, age 75, unknown 15.2
2409 Female, age 72, unknown 14.8
2241 Male, age 72, unknown 14.0
2699 Male, age 18, unknown 11.3
Superior colliculus
nTPM: 25.3
2261 Male, age 18, unknown 36.3
2087 Female, age 72, unknown 35.4
2668 Female, age 75, unknown 28.9
1796 Male, age 53, unknown 27.0
1913 Female, age 42, unknown 25.7
1895 Male, age 76, right hemisphere 25.1
1995 Male, age 72, unknown 21.1
1839 Male, age 51, unknown 19.3
2587 Male, age 74, left hemisphere 17.3
2664 Male, age 75, both hemispheres 16.9
Ventral tegmental area
nTPM: 16.5
2223 Female, age 72, unknown 20.4
2410 Female, age 72, unknown 18.0
2218 Male, age 76, both hemispheres 16.4
1915 Female, age 42, unknown 16.3
2021 Male, age 53, unknown 15.1
1942 Male, age 51, unknown 13.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.8
Samples: 139

Max nTPM: 185.0
Min nTPM: 7.2
Std nTPM: 20.8
Median nTPM: 19.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 185.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 134.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 93.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 70.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 62.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 61.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 52.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 48.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 48.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 47.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.6
Pig sample Sample description nTPM
Midbrain
nTPM: 87.6
Samples: 4

Max nTPM: 188.7
Min nTPM: 20.7
Sample A Female 20.7
Sample B Female 36.7
Sample C Male 188.7
Sample D Male 104.2
Periaqueductal gray
nTPM: 29.6
Samples: 3

Max nTPM: 38.0
Min nTPM: 24.5
Sample B Female 24.5
Sample C Male 38.0
Sample D Male 26.2
Substantia nigra
nTPM: 22.8
Samples: 4

Max nTPM: 46.5
Min nTPM: 3.4
Sample A Female 46.5
Sample B Female 12.2
Sample C Male 29.1
Sample D Male 3.4
Superior colliculi
nTPM: 87.0
Samples: 4

Max nTPM: 146.1
Min nTPM: 40.7
Sample A Female 94.5
Sample B Female 40.7
Sample C Male 146.1
Sample D Male 66.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 150.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 150.7
Samples: 4

Max nTPM: 157.0
Min nTPM: 145.2
Sample A Male 147.1
Sample B Male 153.5
Sample C Female 157.0
Sample D Female 145.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.9
75147760 Antisense, RP_051206_02_H12, Mouse strain C57BL/6J (56 days, male) 11.9
74427071 Antisense, RP_051206_02_H12, Mouse strain C57BL/6J (56 days, male) 8.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.