MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.5 nTPM
HPA:10.5 nTPM
GTEx:10.3 nTPM
FANTOM5:80.6 Scaled Tags Per Million
Pig:33.5 nTPM
Mouse:23.6 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.1
2019 Male, age 18, unknown 10.6
1827 Male, age 72, unknown 9.5
1833 Male, age 53, unknown 8.1
2828 Female, age 72, unknown 7.7
1870 Female, age 42, unknown 7.0
2666 Male, age 74, left hemisphere 6.8
1830 Male, age 51, unknown 6.5
2219 Male, age 76, both hemispheres 6.1
2411 Female, age 72, unknown 5.4
2586 Male, age 75, left hemisphere 3.6
Dorsal raphe nucleus
nTPM: 7.5
2016 Female, age 72, unknown 9.0
2298 Female, age 72, unknown 8.8
2047 Male, age 72, unknown 7.1
2750 Male, age 76, both hemispheres 6.6
1828 Male, age 53, unknown 6.0
Inferior colliculus
nTPM: 8.4
1890 Male, age 53, unknown 10.6
1848 Female, age 42, unknown 9.6
2097 Female, age 72, unknown 6.9
2849 Male, age 72, unknown 6.6
Median raphe nucleus
nTPM: 4.6
2220 Male, age 76, midline 4.6
Pedunculopontine tegmental nucleus
nTPM: 8.8
2338 Male, age 61, both hemispheres 9.6
1921 Female, age 85, both hemispheres 8.5
2334 Male, age 80, both hemispheres 8.5
Periaquaductal grey, anterior
nTPM: 7.4
2502 Female, age 75, unknown 8.8
1795 Male, age 51, unknown 6.9
1947 Male, age 18, unknown 6.6
Periaquaductal grey, dorsal
nTPM: 8.8
2850 Male, age 76, both hemispheres 11.6
1831 Male, age 72, unknown 9.3
1840 Male, age 53, unknown 8.0
2464 Female, age 72, unknown 6.4
Periaquaductal grey, lateral
nTPM: 10.5
2272 Male, age 74, both hemispheres 10.7
2053 Male, age 18, unknown 10.5
2140 Male, age 76, both hemispheres 10.2
Pretectal area
nTPM: 8.8
1944 Female, age 72, unknown 12.2
2407 Male, age 75, both hemispheres 10.9
2007 Male, age 72, unknown 10.4
1817 Female, age 42, unknown 9.6
1815 Male, age 53, unknown 9.5
2273 Male, age 74, both hemispheres 8.8
1816 Male, age 51, unknown 8.4
2667 Female, age 75, unknown 7.7
2316 Male, age 76, right hemisphere 6.9
2224 Female, age 72, unknown 6.4
2825 Male, age 18, unknown 6.1
Red nucleus
nTPM: 8.4
1865 Male, age 51, unknown 10.7
2823 Male, age 76, right hemisphere 10.5
1904 Male, age 53, unknown 9.7
1821 Female, age 72, unknown 9.6
2503 Female, age 72, unknown 9.3
2785 Male, age 18, unknown 9.3
2725 Female, age 75, unknown 8.5
1954 Female, age 42, unknown 8.1
2588 Male, age 74, left hemisphere 8.0
2584 Male, age 75, left hemisphere 6.2
2227 Male, age 72, unknown 5.7
2769 Male, age 72, unknown 5.0
Substantia nigra
nTPM: 8.2
2409 Female, age 72, unknown 11.9
2241 Male, age 72, unknown 9.7
2590 Female, age 75, unknown 9.2
2665 Male, age 74, both hemispheres 9.2
1889 Female, age 72, unknown 8.7
1851 Male, age 51, unknown 8.0
1941 Male, age 53, unknown 6.7
1916 Female, age 42, unknown 6.3
2583 Male, age 75, right hemisphere 6.3
2699 Male, age 18, unknown 6.3
Superior colliculus
nTPM: 8.8
1995 Male, age 72, unknown 11.2
2587 Male, age 74, left hemisphere 11.1
1913 Female, age 42, unknown 10.3
2261 Male, age 18, unknown 9.8
1895 Male, age 76, right hemisphere 9.4
1839 Male, age 51, unknown 8.4
2087 Female, age 72, unknown 7.9
1796 Male, age 53, unknown 7.5
2668 Female, age 75, unknown 7.1
2664 Male, age 75, both hemispheres 5.1
Ventral tegmental area
nTPM: 6.9
2410 Female, age 72, unknown 8.0
2218 Male, age 76, both hemispheres 7.0
1942 Male, age 51, unknown 6.7
2021 Male, age 53, unknown 6.7
2223 Female, age 72, unknown 6.7
1915 Female, age 42, unknown 6.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 16.4
Min nTPM: 1.8
Std nTPM: 2.6
Median nTPM: 10.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 16.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 15.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 15.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 15.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 15.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 15.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 14.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 14.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 14.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.6
FF:10158-103A5 76 years, female 80.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.5
Pig sample Sample description nTPM
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 38.4
Min nTPM: 29.2
Sample A Female 38.4
Sample B Female 30.2
Sample C Male 33.6
Sample D Male 29.2
Periaqueductal gray
nTPM: 32.1
Samples: 3

Max nTPM: 32.8
Min nTPM: 31.1
Sample B Female 32.5
Sample C Male 32.8
Sample D Male 31.1
Substantia nigra
nTPM: 31.2
Samples: 4

Max nTPM: 31.9
Min nTPM: 30.1
Sample A Female 31.4
Sample B Female 31.9
Sample C Male 30.1
Sample D Male 31.5
Superior colliculi
nTPM: 33.4
Samples: 4

Max nTPM: 34.4
Min nTPM: 32.1
Sample A Female 33.4
Sample B Female 33.8
Sample C Male 34.4
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 25.4
Min nTPM: 19.9
Sample A Male 19.9
Sample B Male 25.3
Sample C Female 25.4
Sample D Female 24.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68546440 Antisense, RP_050120_02_E04, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.