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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1498.0 nTPM
HPA:1498.0 nTPM
FANTOM5:4544.9 Scaled Tags Per Million

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 1498.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1262.3
1984 Male, age 76, both hemispheres 1303.8
2188 Female, age 91, both hemispheres 1263.5
2301 Female, age 85, both hemispheres 1252.3
2090 Male, age 80, both hemispheres 1229.6
Dorsal cochlear nucleus
nTPM: 1394.7
2802 Male, age 74, right hemisphere 1460.4
2370 Male, age 61, both hemispheres 1456.3
2058 Male, age 76, both hemispheres 1393.4
2187 Female, age 91, both hemispheres 1357.6
2378 Male, age 80, both hemispheres 1305.6
Dorsal tegmental nucleus
nTPM: 1460.7
2083 Male, age 80, both hemispheres 1594.0
2358 Male, age 61, both hemispheres 1504.3
1936 Male, age 76, left hemisphere 1416.6
2326 Male, age 74, both hemispheres 1327.7
Dorsolateral tegmental area
nTPM: 1408.9
2654 Male, age 80, both hemispheres 1568.6
2337 Male, age 61, both hemispheres 1466.3
2141 Male, age 76, both hemispheres 1401.4
2360 Male, age 74, both hemispheres 1321.9
2751 Female, age 85, both hemispheres 1286.1
Kolliker-Fuse nucleus
nTPM: 1498.0
2163 Male, age 80, both hemispheres 1625.6
2315 Male, age 76, right hemisphere 1562.3
2793 Female, age 91, left hemisphere 1306.0
Lateral lemniscal nuclei
nTPM: 1270.1
2036 Male, age 80, both hemispheres 1312.0
2169 Male, age 76, both hemispheres 1292.7
2453 Male, age 74, right hemisphere 1276.5
2746 Female, age 85, left hemisphere 1241.9
2320 Female, age 91, left hemisphere 1227.3
Lateral parabrachial nucleus
nTPM: 1354.5
2792 Male, age 76, both hemispheres 1522.0
2790 Male, age 61, both hemispheres 1334.6
2139 Female, age 85, right hemisphere 1296.7
2013 Male, age 80, both hemispheres 1264.6
Lateral vestibular nucleus
nTPM: 1375.9
2184 Male, age 76, both hemispheres 1447.3
2311 Male, age 80, both hemispheres 1304.4
Locus coeruleus
nTPM: 1434.6
2014 Male, age 55, unknown 1599.0
2317 Female, age 72, unknown 1576.4
2123 Female, age 91, both hemispheres 1397.5
2162 Male, age 80, both hemispheres 1388.1
1980 Male, age 76, both hemispheres 1379.8
2720 Male, age 74, both hemispheres 1367.3
2788 Male, age 74, unknown 1334.3
Medial olivary nucleus
nTPM: 1371.4
2138 Female, age 91, both hemispheres 1430.6
1962 Male, age 76, both hemispheres 1425.2
2851 Male, age 80, both hemispheres 1361.4
1943 Male, age 61, both hemispheres 1268.5
Medial parabrachial nucleus
nTPM: 1364.2
2156 Male, age 61, both hemispheres 1437.0
2786 Male, age 76, both hemispheres 1406.3
2854 Male, age 80, both hemispheres 1402.0
2170 Female, age 91, both hemispheres 1372.8
2463 Female, age 85, right hemisphere 1202.9
Medial periolivary nuclei
nTPM: 1264.0
2791 Male, age 74, right hemisphere 1283.7
2458 Female, age 91, both hemispheres 1273.3
2171 Female, age 85, both hemispheres 1260.5
2063 Male, age 76, both hemispheres 1251.7
2081 Male, age 80, both hemispheres 1250.9
Motor facial nucleus
nTPM: 1308.6
2795 Female, age 91, both hemispheres 1437.5
2126 Male, age 61, both hemispheres 1333.8
2327 Male, age 80, both hemispheres 1313.4
2062 Male, age 76, both hemispheres 1262.4
2365 Male, age 74, right hemisphere 1252.4
2697 Female, age 85, both hemispheres 1252.0
Motor trigeminal nucleus
nTPM: 1342.2
2335 Male, age 61, both hemispheres 1453.1
2309 Male, age 76, both hemispheres 1382.1
2079 Male, age 80, both hemispheres 1320.1
2560 Male, age 74, both hemispheres 1283.1
2321 Female, age 91, both hemispheres 1272.7
Nuclei of the trapezoid body
nTPM: 1296.9
1983 Male, age 76, both hemispheres 1351.8
2368 Female, age 91, both hemispheres 1325.5
2166 Male, age 80, both hemispheres 1284.6
2735 Female, age 85, both hemispheres 1278.8
2159 Male, age 61, both hemispheres 1244.0
Paramedian reticular nucleus
nTPM: 1348.5
2052 Male, age 76, both hemispheres 1435.2
2313 Male, age 61, both hemispheres 1340.2
2050 Female, age 85, both hemispheres 1326.4
2057 Male, age 80, both hemispheres 1292.4
Pontine nuclei
nTPM: 1260.4
2787 Female, age 85, both hemispheres 1408.1
2115 Male, age 80, left hemisphere 1266.1
2319 Female, age 91, both hemispheres 1253.0
1968 Male, age 76, left hemisphere 1250.1
1863 Male, age 55, unknown 1240.2
2727 Male, age 61, right hemisphere 1230.7
2454 Male, age 74, left hemisphere 1230.0
2109 Female, age 72, unknown 1204.7
Pontine raphe nucleus
nTPM: 1334.9
2853 Male, age 76, midline 1368.8
2122 Female, age 85, midline 1301.0
Posteroventral cochlear nucleus
nTPM: 1329.7
2371 Male, age 61, both hemispheres 1492.3
2752 Female, age 85, both hemispheres 1361.6
2070 Male, age 76, both hemispheres 1331.4
2135 Female, age 91, both hemispheres 1239.5
2341 Male, age 80, both hemispheres 1223.9
Principal sensory trigeminal nucleus
nTPM: 1317.1
2324 Male, age 76, both hemispheres 1443.3
2008 Male, age 80, left hemisphere 1288.5
2158 Male, age 61, both hemispheres 1273.5
2367 Female, age 91, left hemisphere 1262.9
Reticular pontine nucleus, caudal
nTPM: 1328.8
2332 Male, age 80, right hemisphere 1386.8
2092 Male, age 76, both hemispheres 1324.6
2457 Female, age 91, both hemispheres 1311.9
2559 Male, age 74, both hemispheres 1292.0
Reticular pontine nucleus, oral
nTPM: 1346.5
1939 Male, age 80, both hemispheres 1609.2
2167 Male, age 76, both hemispheres 1426.8
2012 Female, age 85, both hemispheres 1261.0
2366 Female, age 91, both hemispheres 1241.1
2361 Male, age 74, both hemispheres 1194.4
Reticulotegmental nucleus
nTPM: 1419.1
2333 Male, age 80, both hemispheres 1545.8
2322 Female, age 91, both hemispheres 1438.1
2325 Male, age 76, both hemispheres 1362.1
2452 Male, age 74, both hemispheres 1330.5
Spinal trigeminal nucleus, oral
nTPM: 1387.0
2164 Male, age 80, both hemispheres 1425.0
2737 Female, age 85, both hemispheres 1404.1
1978 Male, age 76, both hemispheres 1332.1
Subcoeruleus area
nTPM: 1343.5
2323 Female, age 91, left hemisphere 1483.7
1958 Male, age 80, both hemispheres 1403.4
2451 Male, age 74, both hemispheres 1342.2
2369 Female, age 85, left hemisphere 1254.9
2089 Male, age 76, left hemisphere 1233.4
Superior olive
nTPM: 1276.4
2561 Female, age 91, both hemispheres 1319.7
2020 Male, age 76, both hemispheres 1278.6
2329 Male, age 80, right hemisphere 1277.0
2364 Male, age 74, right hemisphere 1256.1
1875 Female, age 85, both hemispheres 1250.6
Superior vestibular nucleus
nTPM: 1407.6
2061 Male, age 76, both hemispheres 1472.9
2383 Male, age 74, both hemispheres 1408.1
2015 Male, age 80, both hemispheres 1341.7
Ventral periolivary nuclei
nTPM: 1280.4
2165 Male, age 80, both hemispheres 1327.0
2794 Female, age 91, left hemisphere 1314.6
2023 Male, age 76, both hemispheres 1247.7
2130 Female, age 85, both hemispheres 1232.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1345.4
2359 Male, age 61, both hemispheres 1470.6
2840 Female, age 85, both hemispheres 1376.8
2456 Female, age 91, both hemispheres 1344.1
2161 Male, age 80, both hemispheres 1314.6
1959 Male, age 76, both hemispheres 1304.5
2449 Male, age 74, both hemispheres 1262.0

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 4544.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 4544.9
FF:10182-103D2 60 years, female 6527.5
FF:10165-103B3 76 years, female 2562.3
Pons
Scaled Tags Per Million: 1139.3
FF:10033-101E6 18-54 years, mixed 1139.3

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