MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1538.3 nTPM
HPA:1538.3 nTPM
GTEx:1156.9 nTPM
FANTOM5:1741.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1538.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1343.6
2586 Male, age 75, left hemisphere 1512.6
2828 Female, age 72, unknown 1495.9
1870 Female, age 42, unknown 1398.3
1833 Male, age 53, unknown 1333.2
1830 Male, age 51, unknown 1331.4
1827 Male, age 72, unknown 1306.4
2666 Male, age 74, left hemisphere 1303.4
2411 Female, age 72, unknown 1297.2
2019 Male, age 18, unknown 1253.2
2219 Male, age 76, both hemispheres 1204.1
Dorsal raphe nucleus
nTPM: 1388.6
1828 Male, age 53, unknown 1491.2
2047 Male, age 72, unknown 1447.7
2016 Female, age 72, unknown 1431.6
2750 Male, age 76, both hemispheres 1311.6
2298 Female, age 72, unknown 1260.9
Inferior colliculus
nTPM: 1389.6
2849 Male, age 72, unknown 1416.8
1890 Male, age 53, unknown 1400.7
1848 Female, age 42, unknown 1392.4
2097 Female, age 72, unknown 1348.4
Median raphe nucleus
nTPM: 1417.2
2220 Male, age 76, midline 1417.2
Pedunculopontine tegmental nucleus
nTPM: 1423.2
2334 Male, age 80, both hemispheres 1516.8
2338 Male, age 61, both hemispheres 1450.6
1921 Female, age 85, both hemispheres 1302.1
Periaquaductal grey, anterior
nTPM: 1308.6
2502 Female, age 75, unknown 1362.2
1795 Male, age 51, unknown 1329.2
1947 Male, age 18, unknown 1234.5
Periaquaductal grey, dorsal
nTPM: 1372.0
2850 Male, age 76, both hemispheres 1558.5
1840 Male, age 53, unknown 1332.7
1831 Male, age 72, unknown 1301.5
2464 Female, age 72, unknown 1295.2
Periaquaductal grey, lateral
nTPM: 1374.7
2140 Male, age 76, both hemispheres 1441.2
2053 Male, age 18, unknown 1389.3
2272 Male, age 74, both hemispheres 1293.5
Pretectal area
nTPM: 1336.9
2667 Female, age 75, unknown 1411.7
1944 Female, age 72, unknown 1408.0
1817 Female, age 42, unknown 1401.9
2273 Male, age 74, both hemispheres 1375.3
2825 Male, age 18, unknown 1367.7
1816 Male, age 51, unknown 1344.7
2224 Female, age 72, unknown 1302.8
2316 Male, age 76, right hemisphere 1295.8
1815 Male, age 53, unknown 1279.2
2407 Male, age 75, both hemispheres 1268.0
2007 Male, age 72, unknown 1251.0
Red nucleus
nTPM: 1437.0
1954 Female, age 42, unknown 1551.5
2769 Male, age 72, unknown 1497.3
2503 Female, age 72, unknown 1475.0
2227 Male, age 72, unknown 1473.3
1821 Female, age 72, unknown 1466.7
2823 Male, age 76, right hemisphere 1445.0
1904 Male, age 53, unknown 1427.3
2725 Female, age 75, unknown 1423.1
1865 Male, age 51, unknown 1408.0
2588 Male, age 74, left hemisphere 1401.4
2584 Male, age 75, left hemisphere 1351.8
2785 Male, age 18, unknown 1323.0
Substantia nigra
nTPM: 1538.3
2699 Male, age 18, unknown 2085.4
1916 Female, age 42, unknown 1708.0
1851 Male, age 51, unknown 1554.1
2241 Male, age 72, unknown 1503.3
2409 Female, age 72, unknown 1499.3
1889 Female, age 72, unknown 1455.2
2665 Male, age 74, both hemispheres 1437.7
2583 Male, age 75, right hemisphere 1388.7
2590 Female, age 75, unknown 1382.1
1941 Male, age 53, unknown 1368.6
Superior colliculus
nTPM: 1348.1
1796 Male, age 53, unknown 1445.5
2664 Male, age 75, both hemispheres 1378.3
1995 Male, age 72, unknown 1371.9
2587 Male, age 74, left hemisphere 1360.6
2087 Female, age 72, unknown 1360.4
1913 Female, age 42, unknown 1338.8
2261 Male, age 18, unknown 1331.0
1839 Male, age 51, unknown 1318.4
2668 Female, age 75, unknown 1311.8
1895 Male, age 76, right hemisphere 1264.8
Ventral tegmental area
nTPM: 1432.2
1915 Female, age 42, unknown 1502.1
2410 Female, age 72, unknown 1440.2
2021 Male, age 53, unknown 1436.8
2218 Male, age 76, both hemispheres 1431.1
1942 Male, age 51, unknown 1396.7
2223 Female, age 72, unknown 1385.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1156.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1156.9
Samples: 139

Max nTPM: 5076.9
Min nTPM: 116.0
Std nTPM: 842.9
Median nTPM: 911.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 5076.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 3686.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 3673.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 3515.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 3071.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2995.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 2984.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2903.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 2896.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 2825.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 2739.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1741.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1741.6
FF:10158-103A5 76 years, female 1741.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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