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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1352.9 nTPM
HPA:1352.9 nTPM
GTEx:574.6 nTPM
FANTOM5:1362.9 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1352.9
Sample id Sample description nTPM
Amygdala
nTPM: 1352.9
2695 Female, age 67, right hemisphere 1543.8
2814 Male, age 76, right hemisphere 1374.0
2514 Male, age 75, right hemisphere 1296.1
2517 Female, age 94, left hemisphere 1288.1
1987 Female, age 91, left hemisphere 1262.4
Basal amygdala
nTPM: 1289.5
2609 Male, age 75, right hemisphere 1442.7
1955 Male, age 76, both hemispheres 1293.2
2243 Female, age 91, right hemisphere 1275.6
2110 Male, age 80, left hemisphere 1270.5
2685 Female, age 94, left hemisphere 1235.8
2827 Female, age 67, right hemisphere 1219.0
Central amygdala
nTPM: 1324.6
2515 Male, age 75, right hemisphere 1360.1
1905 Male, age 76, both hemispheres 1329.4
2826 Female, age 94, left hemisphere 1324.7
2239 Male, age 80, left hemisphere 1321.8
2701 Female, age 91, right hemisphere 1287.0
Corticomedial amygdala
nTPM: 1265.7
2428 Male, age 75, right hemisphere 1362.4
2829 Male, age 80, left hemisphere 1307.9
2429 Female, age 94, left hemisphere 1258.9
2240 Male, age 76, both hemispheres 1247.4
2535 Female, age 67, right hemisphere 1211.6
2242 Female, age 91, right hemisphere 1206.3
Lateral amygdala
nTPM: 1277.3
2516 Male, age 75, right hemisphere 1345.9
1883 Male, age 76, both hemispheres 1308.0
2256 Male, age 80, left hemisphere 1288.8
2255 Female, age 91, right hemisphere 1250.2
2830 Female, age 67, right hemisphere 1243.4
2534 Female, age 94, left hemisphere 1227.8
Stria terminalis, bed nucleus
nTPM: 1184.6
2201 Male, age 74, unknown 1203.6
2486 Female, age 94, both hemispheres 1191.2
1974 Female, age 91, both hemispheres 1159.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 574.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 574.6
Samples: 152

Max nTPM: 2597.1
Min nTPM: 144.0
Std nTPM: 356.3
Median nTPM: 488.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2597.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1985.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1516.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1448.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1369.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1306.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1288.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1247.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1245.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1213.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1212.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1182.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1136.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1103.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1094.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1044.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1008.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 989.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 972.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 952.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 921.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 886.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 878.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 872.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 819.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 819.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 809.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 806.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 800.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 799.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 790.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 783.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 775.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 744.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 743.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 737.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 706.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 706.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 683.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 680.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 659.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 656.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 654.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 649.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 646.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 627.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 617.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 607.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 606.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 588.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 582.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 581.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 576.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 570.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 568.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 564.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 562.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 560.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 559.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 545.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 545.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 543.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 541.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 539.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 533.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 526.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 518.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 517.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 510.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 509.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 508.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 504.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 501.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 500.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 499.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 489.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 487.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 481.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 477.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 471.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 470.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 465.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 456.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 446.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 439.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 431.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 429.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 421.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 419.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 417.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 414.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 412.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 406.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 404.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 398.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 396.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 395.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 393.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 391.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 380.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 379.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 376.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 372.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 364.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 362.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 362.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 360.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 359.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 353.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 353.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 353.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 352.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 350.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 347.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 347.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 335.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 334.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 327.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 325.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 321.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 311.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 310.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 305.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 305.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 303.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 300.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 299.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 295.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 292.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 289.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 284.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 281.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 279.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 279.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 276.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 275.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 271.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 266.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 265.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 264.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 249.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 231.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 221.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 208.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 198.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 193.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 184.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 171.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 169.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 155.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 150.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 144.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1362.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1362.9
FF:10151-102I7 76 years, female 1362.9

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