MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA:9.0 nTPM
GTEx:9.9 nTPM
FANTOM5:44.1 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:17.5 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.5
2219 Male, age 76, both hemispheres 10.3
2586 Male, age 75, left hemisphere 9.9
1833 Male, age 53, unknown 8.9
1830 Male, age 51, unknown 8.8
2666 Male, age 74, left hemisphere 8.8
1827 Male, age 72, unknown 8.1
2828 Female, age 72, unknown 8.1
1870 Female, age 42, unknown 7.7
2019 Male, age 18, unknown 7.4
2411 Female, age 72, unknown 7.0
Dorsal raphe nucleus
nTPM: 7.4
2750 Male, age 76, both hemispheres 8.2
2047 Male, age 72, unknown 8.1
1828 Male, age 53, unknown 7.6
2016 Female, age 72, unknown 7.0
2298 Female, age 72, unknown 6.1
Inferior colliculus
nTPM: 8.1
2849 Male, age 72, unknown 10.1
1848 Female, age 42, unknown 8.2
1890 Male, age 53, unknown 8.0
2097 Female, age 72, unknown 6.2
Median raphe nucleus
nTPM: 9.0
2220 Male, age 76, midline 9.0
Pedunculopontine tegmental nucleus
nTPM: 8.3
2338 Male, age 61, both hemispheres 10.2
2334 Male, age 80, both hemispheres 7.6
1921 Female, age 85, both hemispheres 7.3
Periaquaductal grey, anterior
nTPM: 7.9
1947 Male, age 18, unknown 8.5
1795 Male, age 51, unknown 7.7
2502 Female, age 75, unknown 7.4
Periaquaductal grey, dorsal
nTPM: 7.7
2850 Male, age 76, both hemispheres 9.5
2464 Female, age 72, unknown 7.3
1831 Male, age 72, unknown 7.1
1840 Male, age 53, unknown 7.1
Periaquaductal grey, lateral
nTPM: 8.8
2140 Male, age 76, both hemispheres 10.5
2272 Male, age 74, both hemispheres 8.7
2053 Male, age 18, unknown 7.4
Pretectal area
nTPM: 8.0
2316 Male, age 76, right hemisphere 9.0
2407 Male, age 75, both hemispheres 8.8
1944 Female, age 72, unknown 8.7
2825 Male, age 18, unknown 8.3
1816 Male, age 51, unknown 8.2
2667 Female, age 75, unknown 7.9
2007 Male, age 72, unknown 7.7
1815 Male, age 53, unknown 7.5
1817 Female, age 42, unknown 7.5
2224 Female, age 72, unknown 7.0
2273 Male, age 74, both hemispheres 6.9
Red nucleus
nTPM: 8.1
2588 Male, age 74, left hemisphere 10.0
2823 Male, age 76, right hemisphere 9.4
2584 Male, age 75, left hemisphere 9.0
2785 Male, age 18, unknown 8.5
2227 Male, age 72, unknown 8.4
2769 Male, age 72, unknown 8.3
2725 Female, age 75, unknown 7.8
1904 Male, age 53, unknown 7.7
2503 Female, age 72, unknown 7.6
1865 Male, age 51, unknown 7.5
1954 Female, age 42, unknown 6.9
1821 Female, age 72, unknown 5.9
Substantia nigra
nTPM: 7.7
2590 Female, age 75, unknown 8.8
2699 Male, age 18, unknown 8.8
1941 Male, age 53, unknown 8.6
2665 Male, age 74, both hemispheres 8.3
2583 Male, age 75, right hemisphere 8.0
1889 Female, age 72, unknown 7.5
1916 Female, age 42, unknown 7.3
1851 Male, age 51, unknown 6.8
2241 Male, age 72, unknown 6.5
2409 Female, age 72, unknown 6.4
Superior colliculus
nTPM: 8.1
1913 Female, age 42, unknown 8.8
2664 Male, age 75, both hemispheres 8.8
1839 Male, age 51, unknown 8.6
1895 Male, age 76, right hemisphere 8.5
2087 Female, age 72, unknown 8.5
2261 Male, age 18, unknown 8.0
1796 Male, age 53, unknown 7.7
2668 Female, age 75, unknown 7.7
1995 Male, age 72, unknown 7.4
2587 Male, age 74, left hemisphere 7.1
Ventral tegmental area
nTPM: 7.9
2218 Male, age 76, both hemispheres 8.5
1942 Male, age 51, unknown 8.4
2021 Male, age 53, unknown 8.2
2223 Female, age 72, unknown 8.0
2410 Female, age 72, unknown 7.2
1915 Female, age 42, unknown 7.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.9
Samples: 139

Max nTPM: 14.6
Min nTPM: 4.4
Std nTPM: 1.5
Median nTPM: 10.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 13.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 13.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 13.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 13.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 12.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 12.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 12.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 12.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 12.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.1
FF:10158-103A5 76 years, female 44.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.1
Pig sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.6
Sample A Female 11.2
Sample B Female 7.6
Sample C Male 8.8
Sample D Male 8.9
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 8.7
Min nTPM: 7.9
Sample B Female 7.9
Sample C Male 8.7
Sample D Male 8.3
Substantia nigra
nTPM: 8.9
Samples: 4

Max nTPM: 9.5
Min nTPM: 8.2
Sample A Female 8.9
Sample B Female 8.2
Sample C Male 9.5
Sample D Male 9.1
Superior colliculi
nTPM: 8.8
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.6
Sample A Female 8.7
Sample B Female 7.6
Sample C Male 8.5
Sample D Male 10.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 18.8
Min nTPM: 15.0
Sample A Male 15.0
Sample B Male 17.8
Sample C Female 18.3
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
69529077 Antisense, RP_050421_03_D11, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.