MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:901.9 nTPM
HPA:901.9 nTPM
GTEx:914.6 nTPM
FANTOM5:285.8 Scaled Tags Per Million
Pig:426.2 nTPM
Mouse:333.4 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 901.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 871.8
1870 Female, age 42, unknown 894.7
2666 Male, age 74, left hemisphere 886.2
2411 Female, age 72, unknown 877.5
1827 Male, age 72, unknown 876.2
1833 Male, age 53, unknown 874.9
1830 Male, age 51, unknown 874.8
2828 Female, age 72, unknown 872.4
2219 Male, age 76, both hemispheres 859.9
2019 Male, age 18, unknown 851.5
2586 Male, age 75, left hemisphere 850.1
Dorsal raphe nucleus
nTPM: 875.0
2298 Female, age 72, unknown 891.9
2016 Female, age 72, unknown 877.3
2750 Male, age 76, both hemispheres 873.7
1828 Male, age 53, unknown 871.2
2047 Male, age 72, unknown 861.0
Inferior colliculus
nTPM: 876.6
2849 Male, age 72, unknown 881.3
1890 Male, age 53, unknown 878.3
1848 Female, age 42, unknown 874.0
2097 Female, age 72, unknown 872.6
Median raphe nucleus
nTPM: 889.1
2220 Male, age 76, midline 889.1
Pedunculopontine tegmental nucleus
nTPM: 901.9
2338 Male, age 61, both hemispheres 935.7
2334 Male, age 80, both hemispheres 901.2
1921 Female, age 85, both hemispheres 868.9
Periaquaductal grey, anterior
nTPM: 868.2
2502 Female, age 75, unknown 881.1
1947 Male, age 18, unknown 865.5
1795 Male, age 51, unknown 857.9
Periaquaductal grey, dorsal
nTPM: 880.1
2850 Male, age 76, both hemispheres 889.9
1840 Male, age 53, unknown 887.4
1831 Male, age 72, unknown 883.5
2464 Female, age 72, unknown 859.8
Periaquaductal grey, lateral
nTPM: 869.4
2053 Male, age 18, unknown 883.2
2140 Male, age 76, both hemispheres 864.8
2272 Male, age 74, both hemispheres 860.3
Pretectal area
nTPM: 863.1
2825 Male, age 18, unknown 881.9
2224 Female, age 72, unknown 876.8
1815 Male, age 53, unknown 872.3
2316 Male, age 76, right hemisphere 872.2
1817 Female, age 42, unknown 862.9
2273 Male, age 74, both hemispheres 861.0
1944 Female, age 72, unknown 857.0
2407 Male, age 75, both hemispheres 856.9
1816 Male, age 51, unknown 856.5
2007 Male, age 72, unknown 851.9
2667 Female, age 75, unknown 844.5
Red nucleus
nTPM: 881.3
2503 Female, age 72, unknown 903.1
1821 Female, age 72, unknown 901.7
1865 Male, age 51, unknown 899.1
2725 Female, age 75, unknown 894.8
1904 Male, age 53, unknown 884.9
1954 Female, age 42, unknown 879.8
2227 Male, age 72, unknown 878.3
2769 Male, age 72, unknown 877.7
2588 Male, age 74, left hemisphere 872.1
2823 Male, age 76, right hemisphere 868.0
2584 Male, age 75, left hemisphere 863.1
2785 Male, age 18, unknown 852.4
Substantia nigra
nTPM: 892.4
2699 Male, age 18, unknown 926.1
2409 Female, age 72, unknown 910.4
2665 Male, age 74, both hemispheres 906.9
1851 Male, age 51, unknown 903.8
2241 Male, age 72, unknown 901.9
1916 Female, age 42, unknown 889.1
2590 Female, age 75, unknown 887.2
1889 Female, age 72, unknown 881.6
1941 Male, age 53, unknown 873.1
2583 Male, age 75, right hemisphere 843.8
Superior colliculus
nTPM: 873.2
2587 Male, age 74, left hemisphere 918.1
1913 Female, age 42, unknown 885.7
1995 Male, age 72, unknown 880.0
1895 Male, age 76, right hemisphere 876.0
2668 Female, age 75, unknown 870.2
1839 Male, age 51, unknown 869.2
1796 Male, age 53, unknown 865.1
2261 Male, age 18, unknown 864.8
2087 Female, age 72, unknown 853.2
2664 Male, age 75, both hemispheres 849.2
Ventral tegmental area
nTPM: 890.5
1915 Female, age 42, unknown 908.3
2223 Female, age 72, unknown 900.3
2410 Female, age 72, unknown 891.0
2021 Male, age 53, unknown 889.5
1942 Male, age 51, unknown 877.9
2218 Male, age 76, both hemispheres 875.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 914.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 914.6
Samples: 139

Max nTPM: 2213.0
Min nTPM: 430.8
Std nTPM: 296.1
Median nTPM: 881.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2213.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2026.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1898.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1686.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1660.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1584.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1431.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1425.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1358.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1354.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1313.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 285.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 285.8
FF:10158-103A5 76 years, female 285.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 426.2
Pig sample Sample description nTPM
Midbrain
nTPM: 382.3
Samples: 4

Max nTPM: 448.8
Min nTPM: 316.0
Sample A Female 446.5
Sample B Female 448.8
Sample C Male 317.8
Sample D Male 316.0
Periaqueductal gray
nTPM: 350.1
Samples: 3

Max nTPM: 371.5
Min nTPM: 326.9
Sample B Female 352.0
Sample C Male 371.5
Sample D Male 326.9
Substantia nigra
nTPM: 426.2
Samples: 4

Max nTPM: 537.5
Min nTPM: 340.4
Sample A Female 537.5
Sample B Female 428.3
Sample C Male 398.4
Sample D Male 340.4
Superior colliculi
nTPM: 394.3
Samples: 4

Max nTPM: 439.4
Min nTPM: 357.6
Sample A Female 439.4
Sample B Female 357.6
Sample C Male 404.9
Sample D Male 375.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 333.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 333.4
Samples: 4

Max nTPM: 360.0
Min nTPM: 310.6
Sample A Male 360.0
Sample B Male 333.2
Sample C Female 310.6
Sample D Female 329.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
68441454 Antisense, RP_041214_02_D04, Mouse strain C57BL/6J (56 days, male) 12.0
74819237 Antisense, RP_060315_02_C01, Mouse strain C57BL/6J (56 days, male) 10.0
70813131 Antisense, RP_050712_03_C03, Mouse strain C57BL/6J (56 days, male) 9.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.