MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.8 nTPM
HPA:61.8 nTPM
GTEx:55.1 nTPM
FANTOM5:160.2 Scaled Tags Per Million
Pig:185.6 nTPM
Mouse:44.0 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.2
2019 Male, age 18, unknown 64.5
1830 Male, age 51, unknown 61.1
2219 Male, age 76, both hemispheres 61.1
2666 Male, age 74, left hemisphere 60.2
1833 Male, age 53, unknown 59.3
2828 Female, age 72, unknown 59.3
1870 Female, age 42, unknown 57.8
2586 Male, age 75, left hemisphere 57.4
1827 Male, age 72, unknown 55.9
2411 Female, age 72, unknown 55.5
Dorsal raphe nucleus
nTPM: 55.8
1828 Male, age 53, unknown 58.2
2750 Male, age 76, both hemispheres 58.2
2016 Female, age 72, unknown 55.9
2047 Male, age 72, unknown 54.6
2298 Female, age 72, unknown 51.9
Inferior colliculus
nTPM: 57.6
2849 Male, age 72, unknown 63.0
1848 Female, age 42, unknown 58.9
1890 Male, age 53, unknown 55.4
2097 Female, age 72, unknown 53.0
Median raphe nucleus
nTPM: 60.1
2220 Male, age 76, midline 60.1
Pedunculopontine tegmental nucleus
nTPM: 58.4
2334 Male, age 80, both hemispheres 59.0
2338 Male, age 61, both hemispheres 58.9
1921 Female, age 85, both hemispheres 57.4
Periaquaductal grey, anterior
nTPM: 56.6
1947 Male, age 18, unknown 57.8
2502 Female, age 75, unknown 56.3
1795 Male, age 51, unknown 55.9
Periaquaductal grey, dorsal
nTPM: 57.4
2850 Male, age 76, both hemispheres 63.1
1831 Male, age 72, unknown 57.1
2464 Female, age 72, unknown 55.9
1840 Male, age 53, unknown 53.6
Periaquaductal grey, lateral
nTPM: 56.2
2140 Male, age 76, both hemispheres 58.4
2272 Male, age 74, both hemispheres 55.6
2053 Male, age 18, unknown 54.6
Pretectal area
nTPM: 57.0
2407 Male, age 75, both hemispheres 61.6
2316 Male, age 76, right hemisphere 58.9
1817 Female, age 42, unknown 58.4
1815 Male, age 53, unknown 58.0
1944 Female, age 72, unknown 56.9
1816 Male, age 51, unknown 56.7
2667 Female, age 75, unknown 55.8
2273 Male, age 74, both hemispheres 55.6
2007 Male, age 72, unknown 55.2
2825 Male, age 18, unknown 55.2
2224 Female, age 72, unknown 54.5
Red nucleus
nTPM: 61.8
1821 Female, age 72, unknown 63.8
1904 Male, age 53, unknown 63.4
2769 Male, age 72, unknown 62.8
2584 Male, age 75, left hemisphere 62.5
2785 Male, age 18, unknown 61.9
1954 Female, age 42, unknown 61.7
2725 Female, age 75, unknown 61.4
2227 Male, age 72, unknown 61.2
2503 Female, age 72, unknown 61.1
1865 Male, age 51, unknown 60.8
2823 Male, age 76, right hemisphere 60.5
2588 Male, age 74, left hemisphere 60.1
Substantia nigra
nTPM: 59.8
2665 Male, age 74, both hemispheres 64.1
2590 Female, age 75, unknown 61.8
1941 Male, age 53, unknown 61.6
1916 Female, age 42, unknown 60.6
2699 Male, age 18, unknown 60.2
2409 Female, age 72, unknown 58.9
1851 Male, age 51, unknown 58.4
2241 Male, age 72, unknown 58.4
2583 Male, age 75, right hemisphere 57.9
1889 Female, age 72, unknown 56.0
Superior colliculus
nTPM: 57.6
1913 Female, age 42, unknown 62.5
2664 Male, age 75, both hemispheres 60.8
1995 Male, age 72, unknown 59.5
1839 Male, age 51, unknown 58.4
2587 Male, age 74, left hemisphere 58.2
2668 Female, age 75, unknown 57.5
2087 Female, age 72, unknown 56.6
1796 Male, age 53, unknown 56.3
2261 Male, age 18, unknown 54.6
1895 Male, age 76, right hemisphere 52.1
Ventral tegmental area
nTPM: 58.5
2223 Female, age 72, unknown 63.4
2021 Male, age 53, unknown 58.8
1942 Male, age 51, unknown 58.7
2218 Male, age 76, both hemispheres 58.0
2410 Female, age 72, unknown 56.9
1915 Female, age 42, unknown 55.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.1
Samples: 139

Max nTPM: 96.0
Min nTPM: 31.0
Std nTPM: 12.8
Median nTPM: 52.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 96.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 94.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 94.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 89.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 84.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 82.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 80.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 79.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 76.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 75.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 75.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 160.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 160.2
FF:10158-103A5 76 years, female 160.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 185.6
Pig sample Sample description nTPM
Midbrain
nTPM: 184.6
Samples: 4

Max nTPM: 264.3
Min nTPM: 143.0
Sample A Female 264.3
Sample B Female 179.5
Sample C Male 151.6
Sample D Male 143.0
Periaqueductal gray
nTPM: 163.9
Samples: 3

Max nTPM: 165.5
Min nTPM: 162.5
Sample B Female 162.5
Sample C Male 165.5
Sample D Male 163.8
Substantia nigra
nTPM: 185.6
Samples: 4

Max nTPM: 221.5
Min nTPM: 161.1
Sample A Female 187.4
Sample B Female 161.1
Sample C Male 172.5
Sample D Male 221.5
Superior colliculi
nTPM: 181.9
Samples: 4

Max nTPM: 205.0
Min nTPM: 137.8
Sample A Female 205.0
Sample B Female 137.8
Sample C Male 183.9
Sample D Male 200.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.0
Samples: 4

Max nTPM: 45.1
Min nTPM: 43.0
Sample A Male 43.6
Sample B Male 45.1
Sample C Female 44.4
Sample D Female 43.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
69289333 Antisense, RP_050407_03_A03, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.