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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:444.7 nTPM
HPA:444.7 nTPM
FANTOM5:769.1 Scaled Tags Per Million
Pig:453.8 nTPM
Mouse:477.4 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 444.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 416.0
2301 Female, age 85, both hemispheres 435.3
2188 Female, age 91, both hemispheres 424.0
2090 Male, age 80, both hemispheres 403.5
1984 Male, age 76, both hemispheres 401.3
Area postrema
nTPM: 398.3
2054 Male, age 76, both hemispheres 405.3
2799 Male, age 61, both hemispheres 395.1
2306 Male, age 80, both hemispheres 394.6
Cuneate nuclei
nTPM: 407.3
2376 Male, age 61, both hemispheres 409.4
2381 Male, age 80, both hemispheres 406.3
2131 Male, age 76, both hemispheres 406.1
Dorsal cochlear nucleus
nTPM: 405.3
2187 Female, age 91, both hemispheres 419.9
2370 Male, age 61, both hemispheres 409.8
2802 Male, age 74, right hemisphere 403.3
2058 Male, age 76, both hemispheres 397.9
2378 Male, age 80, both hemispheres 395.8
Dorsal medullary reticular nucleus
nTPM: 416.3
2040 Female, age 85, both hemispheres 434.9
2373 Male, age 61, both hemispheres 416.1
2088 Male, age 76, both hemispheres 397.8
Dorsal motor vagal complex
nTPM: 416.4
2813 Female, age 72, unknown 448.6
2000 Male, age 74, unknown 433.5
2133 Female, age 91, both hemispheres 433.2
2844 Male, age 55, unknown 422.9
2643 Male, age 74, both hemispheres 409.6
2185 Male, age 76, both hemispheres 398.1
2807 Female, age 85, both hemispheres 398.0
2797 Male, age 61, both hemispheres 387.0
Dorsal tegmental nucleus
nTPM: 418.7
2358 Male, age 61, both hemispheres 437.0
2083 Male, age 80, both hemispheres 425.1
2326 Male, age 74, both hemispheres 410.7
1936 Male, age 76, left hemisphere 402.0
Dorsolateral tegmental area
nTPM: 411.7
2654 Male, age 80, both hemispheres 421.1
2337 Male, age 61, both hemispheres 418.8
2141 Male, age 76, both hemispheres 416.0
2751 Female, age 85, both hemispheres 407.6
2360 Male, age 74, both hemispheres 395.0
Gigantocellular reticular nuclei, medullary
nTPM: 414.6
2462 Male, age 74, both hemispheres 423.8
2314 Male, age 61, both hemispheres 420.1
1876 Female, age 85, both hemispheres 419.2
2310 Male, age 80, both hemispheres 414.9
2022 Male, age 76, right hemisphere 405.3
2387 Female, age 91, both hemispheres 404.5
Gigantocellular reticular nuclei, pars
nTPM: 426.0
2168 Male, age 76, both hemispheres 446.4
2336 Male, age 61, both hemispheres 431.0
2084 Female, age 85, both hemispheres 421.6
2706 Male, age 80, both hemispheres 415.4
2330 Male, age 80, both hemispheres 415.3
Inferior olive
nTPM: 415.0
2628 Female, age 91, both hemispheres 432.4
2563 Male, age 74, both hemispheres 422.8
2085 Female, age 85, both hemispheres 417.9
2178 Male, age 61, both hemispheres 412.9
2379 Male, age 80, both hemispheres 389.2
Kolliker-Fuse nucleus
nTPM: 429.4
2793 Female, age 91, left hemisphere 448.6
2163 Male, age 80, both hemispheres 433.0
2315 Male, age 76, right hemisphere 406.6
Lateral lemniscal nuclei
nTPM: 429.1
2169 Male, age 76, both hemispheres 456.0
2036 Male, age 80, both hemispheres 435.2
2746 Female, age 85, left hemisphere 425.2
2453 Male, age 74, right hemisphere 418.0
2320 Female, age 91, left hemisphere 411.4
Lateral medullary reticular nucleus
nTPM: 419.5
2374 Male, age 61, both hemispheres 441.1
2044 Male, age 76, both hemispheres 423.8
2305 Male, age 74, both hemispheres 421.6
2190 Female, age 85, both hemispheres 412.7
2804 Female, age 91, both hemispheres 410.6
2852 Male, age 80, both hemispheres 407.4
Lateral parabrachial nucleus
nTPM: 424.7
2139 Female, age 85, right hemisphere 451.8
2013 Male, age 80, both hemispheres 417.2
2790 Male, age 61, both hemispheres 416.7
2792 Male, age 76, both hemispheres 413.0
Lateral vestibular nucleus
nTPM: 423.8
2184 Male, age 76, both hemispheres 430.5
2311 Male, age 80, both hemispheres 417.1
Locus coeruleus
nTPM: 434.4
2720 Male, age 74, both hemispheres 462.7
2123 Female, age 91, both hemispheres 445.6
2014 Male, age 55, unknown 435.3
2162 Male, age 80, both hemispheres 429.9
1980 Male, age 76, both hemispheres 428.8
2788 Male, age 74, unknown 422.7
2317 Female, age 72, unknown 415.5
Medial olivary nucleus
nTPM: 413.0
2851 Male, age 80, both hemispheres 428.4
1943 Male, age 61, both hemispheres 414.0
1962 Male, age 76, both hemispheres 404.8
2138 Female, age 91, both hemispheres 404.8
Medial parabrachial nucleus
nTPM: 422.6
2854 Male, age 80, both hemispheres 447.5
2170 Female, age 91, both hemispheres 431.8
2156 Male, age 61, both hemispheres 428.2
2786 Male, age 76, both hemispheres 415.6
2463 Female, age 85, right hemisphere 390.2
Medial periolivary nuclei
nTPM: 424.8
2171 Female, age 85, both hemispheres 457.2
2063 Male, age 76, both hemispheres 432.1
2791 Male, age 74, right hemisphere 422.7
2458 Female, age 91, both hemispheres 410.8
2081 Male, age 80, both hemispheres 401.1
Medial vestibular nucleus
nTPM: 435.3
2624 Male, age 61, both hemispheres 466.1
2803 Female, age 91, both hemispheres 441.6
2801 Male, age 74, both hemispheres 440.2
2134 Male, age 76, both hemispheres 432.5
2743 Female, age 85, both hemispheres 416.5
2093 Male, age 80, both hemispheres 415.1
Motor facial nucleus
nTPM: 436.1
2697 Female, age 85, both hemispheres 466.7
2365 Male, age 74, right hemisphere 448.2
2062 Male, age 76, both hemispheres 439.6
2327 Male, age 80, both hemispheres 432.6
2795 Female, age 91, both hemispheres 414.9
2126 Male, age 61, both hemispheres 414.4
Motor hypoglossal nucleus
nTPM: 428.5
2461 Male, age 61, both hemispheres 465.5
2132 Female, age 85, both hemispheres 427.9
2125 Female, age 91, both hemispheres 426.9
2182 Male, age 80, both hemispheres 422.1
2277 Male, age 76, both hemispheres 400.1
Motor trigeminal nucleus
nTPM: 419.0
2335 Male, age 61, both hemispheres 432.1
2079 Male, age 80, both hemispheres 425.8
2560 Male, age 74, both hemispheres 421.7
2309 Male, age 76, both hemispheres 410.3
2321 Female, age 91, both hemispheres 405.2
Nuclei of the trapezoid body
nTPM: 434.4
2159 Male, age 61, both hemispheres 457.3
1983 Male, age 76, both hemispheres 455.4
2735 Female, age 85, both hemispheres 442.4
2166 Male, age 80, both hemispheres 416.8
2368 Female, age 91, both hemispheres 400.0
Nucleus ambiguus
nTPM: 404.6
2096 Female, age 85, both hemispheres 408.0
2071 Male, age 76, both hemispheres 401.2
Nucleus cuneatus
nTPM: 400.7
2564 Male, age 74, both hemispheres 411.6
2562 Male, age 61, both hemispheres 409.2
2808 Female, age 85, both hemispheres 402.2
2100 Male, age 76, both hemispheres 396.8
2805 Female, age 91, both hemispheres 393.8
2380 Male, age 80, both hemispheres 390.5
Nucleus gracilis
nTPM: 409.3
2627 Male, age 74, both hemispheres 441.1
2382 Male, age 80, both hemispheres 403.0
2299 Female, age 85, both hemispheres 383.8
Nucleus raphe magnus
nTPM: 444.7
2172 Female, age 85, both hemispheres 479.7
2160 Male, age 61, both hemispheres 468.5
2455 Male, age 74, both hemispheres 445.7
2051 Male, age 76, both hemispheres 435.3
2328 Male, age 80, both hemispheres 430.7
2459 Female, age 91, both hemispheres 408.6
Nucleus raphe obscurus
nTPM: 418.0
2800 Male, age 61, midline 430.9
2845 Female, age 85, midline 426.5
2142 Male, age 76, midline 396.5
Nucleus raphe pallidus
nTPM: 422.7
1924 Male, age 61, midline 441.3
2183 Male, age 80, midline 428.5
2145 Male, age 76, midline 398.3
Nucleus tractus solitarii
nTPM: 401.1
2656 Male, age 76, both hemispheres 409.4
2191 Female, age 85, both hemispheres 402.9
2307 Male, age 80, both hemispheres 402.1
2144 Female, age 91, right hemisphere 390.0
Paramedian reticular nucleus
nTPM: 421.8
2050 Female, age 85, both hemispheres 441.7
2313 Male, age 61, both hemispheres 426.6
2057 Male, age 80, both hemispheres 413.5
2052 Male, age 76, both hemispheres 405.6
Parvicellular reticular nuclei
nTPM: 415.7
2095 Male, age 76, both hemispheres 418.5
2119 Male, age 80, both hemispheres 416.5
2558 Male, age 74, both hemispheres 412.1
Parvicellular reticular nuclei, medullary
nTPM: 427.5
2189 Female, age 91, both hemispheres 437.5
2181 Male, age 80, left hemisphere 424.8
2091 Female, age 85, both hemispheres 420.2
Peritrigeminal nucleus
nTPM: 424.9
2179 Male, age 61, both hemispheres 435.1
2136 Male, age 76, both hemispheres 422.7
2067 Female, age 85, both hemispheres 416.9
Pontine nuclei
nTPM: 436.7
2787 Female, age 85, both hemispheres 483.0
1863 Male, age 55, unknown 459.6
1968 Male, age 76, left hemisphere 440.0
2727 Male, age 61, right hemisphere 435.4
2109 Female, age 72, unknown 427.9
2454 Male, age 74, left hemisphere 423.2
2319 Female, age 91, both hemispheres 414.1
2115 Male, age 80, left hemisphere 410.7
Pontine raphe nucleus
nTPM: 431.4
2122 Female, age 85, midline 442.4
2853 Male, age 76, midline 420.4
Posteroventral cochlear nucleus
nTPM: 409.8
2752 Female, age 85, both hemispheres 417.2
2135 Female, age 91, both hemispheres 415.2
2070 Male, age 76, both hemispheres 412.4
2371 Male, age 61, both hemispheres 405.2
2341 Male, age 80, both hemispheres 399.1
Prepositus hypoglossal nucleus
nTPM: 412.2
2855 Female, age 85, right hemisphere 424.0
2086 Male, age 80, both hemispheres 400.5
Principal sensory trigeminal nucleus
nTPM: 430.2
2158 Male, age 61, both hemispheres 450.9
2367 Female, age 91, left hemisphere 428.8
2324 Male, age 76, both hemispheres 424.2
2008 Male, age 80, left hemisphere 416.9
Reticular pontine nucleus, caudal
nTPM: 420.3
2092 Male, age 76, both hemispheres 434.6
2332 Male, age 80, right hemisphere 429.1
2559 Male, age 74, both hemispheres 416.4
2457 Female, age 91, both hemispheres 401.1
Reticular pontine nucleus, oral
nTPM: 424.9
2366 Female, age 91, both hemispheres 432.3
2361 Male, age 74, both hemispheres 428.1
2167 Male, age 76, both hemispheres 424.9
2012 Female, age 85, both hemispheres 423.8
1939 Male, age 80, both hemispheres 415.4
Reticulotegmental nucleus
nTPM: 417.1
2325 Male, age 76, both hemispheres 430.3
2322 Female, age 91, both hemispheres 418.9
2333 Male, age 80, both hemispheres 414.0
2452 Male, age 74, both hemispheres 405.1
Spinal trigeminal nucleus, caudal
nTPM: 420.5
2390 Female, age 91, both hemispheres 449.1
2312 Male, age 61, both hemispheres 420.6
2642 Male, age 74, both hemispheres 420.5
2308 Male, age 80, both hemispheres 408.4
2447 Male, age 76, both hemispheres 404.0
Spinal trigeminal nucleus, interpolar
nTPM: 436.3
2625 Male, age 61, both hemispheres 488.4
2066 Male, age 76, right hemisphere 437.3
2389 Female, age 91, both hemispheres 429.6
2033 Male, age 80, both hemispheres 415.6
2386 Female, age 85, both hemispheres 410.5
Spinal trigeminal nucleus, oral
nTPM: 418.0
2164 Male, age 80, both hemispheres 426.3
2737 Female, age 85, both hemispheres 414.2
1978 Male, age 76, both hemispheres 413.5
Spinal vestibular nucleus
nTPM: 423.6
2796 Male, age 61, both hemispheres 444.3
2806 Female, age 85, both hemispheres 429.6
2186 Female, age 91, both hemispheres 428.3
2780 Male, age 80, both hemispheres 419.9
2748 Male, age 76, both hemispheres 416.6
2384 Male, age 74, both hemispheres 402.7
Subcoeruleus area
nTPM: 419.6
1958 Male, age 80, both hemispheres 436.2
2323 Female, age 91, left hemisphere 429.7
2089 Male, age 76, left hemisphere 423.1
2369 Female, age 85, left hemisphere 405.5
2451 Male, age 74, both hemispheres 403.5
Superior olive
nTPM: 430.3
1875 Female, age 85, both hemispheres 454.5
2329 Male, age 80, right hemisphere 426.5
2561 Female, age 91, both hemispheres 424.6
2020 Male, age 76, both hemispheres 423.7
2364 Male, age 74, right hemisphere 422.2
Superior vestibular nucleus
nTPM: 411.3
2383 Male, age 74, both hemispheres 416.5
2015 Male, age 80, both hemispheres 411.5
2061 Male, age 76, both hemispheres 405.8
Ventral medullary reticular nucleus
nTPM: 411.0
2060 Male, age 76, both hemispheres 412.5
2372 Male, age 61, both hemispheres 409.6
Ventral periolivary nuclei
nTPM: 434.4
2130 Female, age 85, both hemispheres 461.7
2165 Male, age 80, both hemispheres 440.1
2023 Male, age 76, both hemispheres 419.4
2794 Female, age 91, left hemisphere 416.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 415.1
2180 Male, age 61, both hemispheres 425.4
1986 Male, age 76, both hemispheres 421.5
2741 Female, age 85, both hemispheres 418.6
2302 Female, age 91, both hemispheres 409.4
2118 Male, age 80, both hemispheres 400.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 426.2
2840 Female, age 85, both hemispheres 452.2
1959 Male, age 76, both hemispheres 436.5
2449 Male, age 74, both hemispheres 426.3
2359 Male, age 61, both hemispheres 422.9
2161 Male, age 80, both hemispheres 419.5
2456 Female, age 91, both hemispheres 399.6

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 769.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 554.2
FF:10182-103D2 60 years, female 649.5
FF:10165-103B3 76 years, female 458.9
Medulla oblongata
Scaled Tags Per Million: 521.7
FF:10174-103C3 60 years, female 581.6
FF:10038-101F2 18-64 years, mixed 571.5
FF:10155-103A2 76 years, female 412.0
Pons
Scaled Tags Per Million: 769.1
FF:10033-101E6 18-54 years, mixed 769.1

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 453.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 366.2
Samples: 4

Max nTPM: 421.6
Min nTPM: 337.3
Sample A Female 337.3
Sample B Female 350.1
Sample C Male 421.6
Sample D Male 355.9
Pons
nTPM: 453.8
Samples: 4

Max nTPM: 513.7
Min nTPM: 363.4
Sample A Female 433.5
Sample B Female 363.4
Sample C Male 513.7
Sample D Male 504.6

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 477.4
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 477.4
Samples: 4

Max nTPM: 524.8
Min nTPM: 446.1
Sample A Male 462.5
Sample B Male 446.1
Sample C Female 524.8
Sample D Female 476.3

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