BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.1 nTPM
HPA:42.1 nTPM
GTEx:33.2 nTPM
FANTOM5:163.6 Scaled Tags Per Million
Pig:24.4 nTPM
Mouse:64.7 nTPM
Allen mouse:3.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041332Antibody HPA065768Antibody CAB034415
Glial cells MediumLowNot detected
Neuronal cells MediumHighMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.3
2481 Female, age 94, left hemisphere 45.1
2846 Female, age 79, unknown 40.7
2288 Male, age 75, left hemisphere 39.8
1781 Male, age 74, unknown 39.7
1857 Female, age 85, left hemisphere 39.5
2290 Female, age 72, unknown 39.2
1854 Male, age 80, left hemisphere 39.1
2289 Male, age 61, right hemisphere 39.0
Claustrum
nTPM: 39.2
1956 Male, age 74, unknown 42.0
2292 Female, age 85, both hemispheres 40.5
2196 Female, age 79, unknown 40.4
2198 Male, age 80, both hemispheres 40.3
2491 Male, age 75, both hemispheres 38.9
2392 Female, age 94, both hemispheres 38.7
2284 Female, age 91, both hemispheres 37.9
2645 Female, age 72, unknown 37.5
2568 Male, age 61, both hemispheres 37.0
Globus pallidus, externus
nTPM: 40.4
1996 Male, age 80, right hemisphere 42.5
2772 Female, age 79, unknown 42.4
2395 Male, age 75, both hemispheres 40.7
2567 Female, age 72, unknown 38.5
2646 Male, age 61, right hemisphere 38.0
Globus pallidus, internus
nTPM: 42.1
2287 Male, age 75, right hemisphere 45.6
2778 Female, age 91, both hemispheres 43.6
2111 Female, age 85, right hemisphere 41.9
1818 Male, age 74, unknown 41.4
2483 Female, age 94, right hemisphere 41.3
2037 Male, age 80, right hemisphere 41.2
2566 Female, age 72, unknown 39.8
Nucleus accumbens
nTPM: 39.6
2391 Female, age 94, left hemisphere 43.8
2698 Female, age 72, unknown 41.2
2286 Male, age 75, left hemisphere 40.3
1806 Female, age 85, left hemisphere 39.2
1856 Female, age 91, right hemisphere 38.9
1783 Male, age 74, unknown 38.7
2732 Male, age 80, right hemisphere 38.2
2824 Male, age 61, right hemisphere 36.8
Nucleus basalis of Meynert
nTPM: 38.9
2821 Male, age 75, both hemispheres 40.2
2393 Male, age 80, right hemisphere 39.5
2484 Female, age 94, left hemisphere 39.5
2569 Male, age 61, both hemispheres 36.3
Nucleus of the diagonal band
nTPM: 38.9
1812 Female, age 91, both hemispheres 40.4
2775 Male, age 80, right hemisphere 40.2
2195 Female, age 85, both hemispheres 39.1
1979 Male, age 74, unknown 38.1
2029 Male, age 61, right hemisphere 36.8
Olfactory tubercle
nTPM: 38.6
1846 Male, age 80, right hemisphere 39.8
2856 Male, age 75, right hemisphere 38.5
2487 Female, age 94, left hemisphere 38.3
1998 Female, age 91, both hemispheres 37.9
Putamen
nTPM: 39.3
2482 Female, age 94, left hemisphere 42.9
1829 Male, age 74, unknown 40.0
2466 Female, age 79, unknown 39.7
1937 Female, age 91, right hemisphere 38.9
1838 Male, age 80, right hemisphere 38.5
2489 Female, age 72, unknown 38.2
2647 Male, age 75, left hemisphere 37.2
Septal nuclei
nTPM: 38.5
2629 Female, age 94, right hemisphere 40.6
1960 Male, age 74, unknown 39.8
2031 Female, age 72, unknown 39.7
2199 Male, age 80, right hemisphere 38.1
2009 Female, age 91, both hemispheres 37.9
2394 Male, age 61, left hemisphere 36.9
2059 Female, age 85, both hemispheres 36.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.2
Samples: 246

Max nTPM: 56.6
Min nTPM: 20.0
Std nTPM: 5.9
Median nTPM: 29.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 56.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 55.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 48.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 48.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 47.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 47.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 45.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 44.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 43.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 42.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 41.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.5
Samples: 246

Max nTPM: 60.9
Min nTPM: 19.5
Std nTPM: 6.6
Median nTPM: 29.9
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 60.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 57.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 55.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 53.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 53.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 52.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 51.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 45.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 45.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 45.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 44.8
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Brain - Putamen (basal ganglia)
Average nTPM: 33.2
Samples: 205

Max nTPM: 74.1
Min nTPM: 22.7
Std nTPM: 6.5
Median nTPM: 31.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 74.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 60.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 56.8
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 52.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 46.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 46.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 45.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 44.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 44.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 43.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 43.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 163.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.1
FF:10164-103B2 76 years, female 99.1
Globus pallidus
Scaled Tags Per Million: 163.6
FF:10175-103C4 60 years, female 179.9
FF:10161-103A8 76 years, female 147.2
Nucleus accumbens
Scaled Tags Per Million: 44.4
FF:10037-101F1 23-56 years, mixed 44.4
Putamen
Scaled Tags Per Million: 104.6
FF:10176-103C5 60 years, female 104.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.4
Pig sample Sample description nTPM
Caudate
nTPM: 19.6
Samples: 4

Max nTPM: 21.5
Min nTPM: 18.1
Sample A Female 21.5
Sample B Female 18.1
Sample C Male 20.7
Sample D Male 18.2
Putamen
nTPM: 24.4
Samples: 4

Max nTPM: 29.8
Min nTPM: 20.4
Sample A Female 24.5
Sample B Female 20.4
Sample C Male 29.8
Sample D Male 22.8
Septum
nTPM: 24.1
Samples: 4

Max nTPM: 28.4
Min nTPM: 20.7
Sample A Female 24.5
Sample B Female 20.7
Sample C Male 28.4
Sample D Male 22.8
Ventral pallidum
nTPM: 21.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 20.1
Sample A Female 20.1
Sample B Female 22.2
Sample C Male 24.0
Sample D Male 20.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.0
Samples: 4

Max nTPM: 58.7
Min nTPM: 51.0
Sample A Male 54.9
Sample B Male 51.5
Sample C Female 58.7
Sample D Female 51.0
Septum
nTPM: 64.7
Samples: 4

Max nTPM: 69.8
Min nTPM: 61.0
Sample A Male 61.0
Sample B Male 69.8
Sample C Female 63.6
Sample D Female 64.5
Ventral forebrain
nTPM: 54.1
Samples: 4

Max nTPM: 58.1
Min nTPM: 51.8
Sample A Male 52.6
Sample B Male 53.9
Sample C Female 58.1
Sample D Female 51.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
512771 Antisense, RP_040809_02_D09, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 3.4
512771 Antisense, RP_040809_02_D09, Mouse strain C57BL/6J (56 days, male) 3.4

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