MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:170.0 nTPM
HPA:170.0 nTPM
GTEx:154.7 nTPM
FANTOM5:45.1 Scaled Tags Per Million
Pig:120.1 nTPM
Mouse:38.3 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 170.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 162.1
2019 Male, age 18, unknown 167.8
2411 Female, age 72, unknown 167.1
1870 Female, age 42, unknown 165.0
2828 Female, age 72, unknown 164.1
1827 Male, age 72, unknown 162.8
1830 Male, age 51, unknown 160.7
1833 Male, age 53, unknown 160.5
2586 Male, age 75, left hemisphere 159.3
2666 Male, age 74, left hemisphere 157.7
2219 Male, age 76, both hemispheres 156.5
Dorsal raphe nucleus
nTPM: 170.0
2298 Female, age 72, unknown 181.5
2750 Male, age 76, both hemispheres 168.4
2047 Male, age 72, unknown 167.4
2016 Female, age 72, unknown 166.9
1828 Male, age 53, unknown 165.5
Inferior colliculus
nTPM: 160.7
2097 Female, age 72, unknown 165.8
1890 Male, age 53, unknown 162.1
1848 Female, age 42, unknown 158.5
2849 Male, age 72, unknown 156.5
Median raphe nucleus
nTPM: 166.3
2220 Male, age 76, midline 166.3
Pedunculopontine tegmental nucleus
nTPM: 166.1
2338 Male, age 61, both hemispheres 168.5
2334 Male, age 80, both hemispheres 166.9
1921 Female, age 85, both hemispheres 163.1
Periaquaductal grey, anterior
nTPM: 165.2
1795 Male, age 51, unknown 167.6
2502 Female, age 75, unknown 166.8
1947 Male, age 18, unknown 161.4
Periaquaductal grey, dorsal
nTPM: 161.2
2850 Male, age 76, both hemispheres 165.5
1840 Male, age 53, unknown 164.3
1831 Male, age 72, unknown 159.6
2464 Female, age 72, unknown 155.4
Periaquaductal grey, lateral
nTPM: 163.3
2272 Male, age 74, both hemispheres 167.8
2053 Male, age 18, unknown 161.4
2140 Male, age 76, both hemispheres 160.7
Pretectal area
nTPM: 163.2
1817 Female, age 42, unknown 168.8
2273 Male, age 74, both hemispheres 167.8
2007 Male, age 72, unknown 166.9
2316 Male, age 76, right hemisphere 165.1
1816 Male, age 51, unknown 164.7
2224 Female, age 72, unknown 164.2
1944 Female, age 72, unknown 162.7
2667 Female, age 75, unknown 161.8
1815 Male, age 53, unknown 160.4
2825 Male, age 18, unknown 158.3
2407 Male, age 75, both hemispheres 155.0
Red nucleus
nTPM: 167.2
1821 Female, age 72, unknown 175.7
2227 Male, age 72, unknown 172.5
2503 Female, age 72, unknown 170.5
2769 Male, age 72, unknown 169.9
1954 Female, age 42, unknown 169.8
2725 Female, age 75, unknown 168.6
2785 Male, age 18, unknown 167.1
2823 Male, age 76, right hemisphere 164.9
1904 Male, age 53, unknown 164.6
1865 Male, age 51, unknown 163.8
2588 Male, age 74, left hemisphere 161.7
2584 Male, age 75, left hemisphere 157.1
Substantia nigra
nTPM: 162.2
1916 Female, age 42, unknown 167.8
1851 Male, age 51, unknown 166.7
2665 Male, age 74, both hemispheres 165.0
1889 Female, age 72, unknown 163.8
2409 Female, age 72, unknown 162.9
2699 Male, age 18, unknown 162.1
1941 Male, age 53, unknown 160.2
2590 Female, age 75, unknown 160.0
2583 Male, age 75, right hemisphere 157.8
2241 Male, age 72, unknown 156.0
Superior colliculus
nTPM: 161.7
1796 Male, age 53, unknown 168.7
2261 Male, age 18, unknown 166.1
1995 Male, age 72, unknown 164.4
1913 Female, age 42, unknown 163.1
2668 Female, age 75, unknown 161.7
2587 Male, age 74, left hemisphere 161.2
2087 Female, age 72, unknown 159.1
1839 Male, age 51, unknown 158.2
1895 Male, age 76, right hemisphere 158.1
2664 Male, age 75, both hemispheres 156.3
Ventral tegmental area
nTPM: 166.3
1915 Female, age 42, unknown 169.9
2410 Female, age 72, unknown 166.0
2021 Male, age 53, unknown 165.8
2223 Female, age 72, unknown 165.6
1942 Male, age 51, unknown 165.5
2218 Male, age 76, both hemispheres 165.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 154.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 154.7
Samples: 139

Max nTPM: 359.0
Min nTPM: 64.1
Std nTPM: 47.1
Median nTPM: 149.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 359.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 357.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 330.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 275.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 245.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 244.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 236.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 224.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 223.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 219.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 215.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.1
FF:10158-103A5 76 years, female 45.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 120.1
Pig sample Sample description nTPM
Midbrain
nTPM: 102.4
Samples: 4

Max nTPM: 127.1
Min nTPM: 88.4
Sample A Female 127.1
Sample B Female 103.2
Sample C Male 88.4
Sample D Male 90.9
Periaqueductal gray
nTPM: 87.3
Samples: 3

Max nTPM: 98.0
Min nTPM: 80.9
Sample B Female 83.1
Sample C Male 98.0
Sample D Male 80.9
Substantia nigra
nTPM: 102.7
Samples: 4

Max nTPM: 153.3
Min nTPM: 69.0
Sample A Female 153.3
Sample B Female 99.2
Sample C Male 89.2
Sample D Male 69.0
Superior colliculi
nTPM: 120.1
Samples: 4

Max nTPM: 158.7
Min nTPM: 89.3
Sample A Female 158.7
Sample B Female 135.3
Sample C Male 96.9
Sample D Male 89.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.3
Samples: 4

Max nTPM: 46.9
Min nTPM: 35.2
Sample A Male 46.9
Sample B Male 35.6
Sample C Female 35.2
Sample D Female 35.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
70303761 Antisense, RP_050609_02_D07, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.