MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:305.0 nTPM
HPA:305.0 nTPM
GTEx:341.8 nTPM
FANTOM5:178.3 Scaled Tags Per Million
Mouse:310.9 nTPM
Allen mouse:19.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 305.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 272.5
2666 Male, age 74, left hemisphere 299.5
1827 Male, age 72, unknown 290.5
2411 Female, age 72, unknown 286.1
2586 Male, age 75, left hemisphere 284.8
2019 Male, age 18, unknown 273.0
2219 Male, age 76, both hemispheres 272.8
2828 Female, age 72, unknown 268.1
1870 Female, age 42, unknown 260.8
1830 Male, age 51, unknown 250.1
1833 Male, age 53, unknown 239.1
Dorsal raphe nucleus
nTPM: 270.5
2047 Male, age 72, unknown 301.5
2750 Male, age 76, both hemispheres 281.7
2298 Female, age 72, unknown 276.2
1828 Male, age 53, unknown 272.9
2016 Female, age 72, unknown 220.5
Inferior colliculus
nTPM: 239.6
2097 Female, age 72, unknown 244.0
1848 Female, age 42, unknown 241.2
1890 Male, age 53, unknown 241.1
2849 Male, age 72, unknown 231.9
Median raphe nucleus
nTPM: 281.8
2220 Male, age 76, midline 281.8
Pedunculopontine tegmental nucleus
nTPM: 272.1
2334 Male, age 80, both hemispheres 275.6
2338 Male, age 61, both hemispheres 272.6
1921 Female, age 85, both hemispheres 268.3
Periaquaductal grey, anterior
nTPM: 272.6
1795 Male, age 51, unknown 289.1
1947 Male, age 18, unknown 284.5
2502 Female, age 75, unknown 244.3
Periaquaductal grey, dorsal
nTPM: 233.1
1831 Male, age 72, unknown 239.5
2464 Female, age 72, unknown 235.5
1840 Male, age 53, unknown 232.2
2850 Male, age 76, both hemispheres 225.2
Periaquaductal grey, lateral
nTPM: 235.5
2053 Male, age 18, unknown 243.0
2272 Male, age 74, both hemispheres 240.1
2140 Male, age 76, both hemispheres 223.4
Pretectal area
nTPM: 279.1
1816 Male, age 51, unknown 337.2
2007 Male, age 72, unknown 328.7
1944 Female, age 72, unknown 314.1
1817 Female, age 42, unknown 305.1
1815 Male, age 53, unknown 281.4
2407 Male, age 75, both hemispheres 276.9
2667 Female, age 75, unknown 259.2
2825 Male, age 18, unknown 253.0
2224 Female, age 72, unknown 247.6
2273 Male, age 74, both hemispheres 235.1
2316 Male, age 76, right hemisphere 231.3
Red nucleus
nTPM: 261.6
2588 Male, age 74, left hemisphere 304.8
2584 Male, age 75, left hemisphere 286.6
2725 Female, age 75, unknown 279.6
2785 Male, age 18, unknown 271.9
2503 Female, age 72, unknown 263.0
1821 Female, age 72, unknown 258.7
2823 Male, age 76, right hemisphere 255.9
1865 Male, age 51, unknown 251.3
1954 Female, age 42, unknown 246.5
2227 Male, age 72, unknown 242.4
2769 Male, age 72, unknown 241.3
1904 Male, age 53, unknown 237.7
Substantia nigra
nTPM: 305.0
1941 Male, age 53, unknown 401.6
1916 Female, age 42, unknown 344.5
1851 Male, age 51, unknown 305.2
2409 Female, age 72, unknown 299.3
2241 Male, age 72, unknown 298.5
1889 Female, age 72, unknown 297.9
2583 Male, age 75, right hemisphere 285.6
2665 Male, age 74, both hemispheres 284.1
2590 Female, age 75, unknown 269.6
2699 Male, age 18, unknown 263.8
Superior colliculus
nTPM: 266.4
2668 Female, age 75, unknown 328.1
2087 Female, age 72, unknown 292.9
2261 Male, age 18, unknown 287.6
1796 Male, age 53, unknown 275.8
2587 Male, age 74, left hemisphere 267.9
2664 Male, age 75, both hemispheres 255.8
1895 Male, age 76, right hemisphere 250.2
1839 Male, age 51, unknown 242.6
1913 Female, age 42, unknown 238.8
1995 Male, age 72, unknown 224.6
Ventral tegmental area
nTPM: 277.4
2410 Female, age 72, unknown 299.8
1915 Female, age 42, unknown 290.8
2218 Male, age 76, both hemispheres 288.1
2223 Female, age 72, unknown 274.2
1942 Male, age 51, unknown 262.6
2021 Male, age 53, unknown 249.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 341.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 341.8
Samples: 139

Max nTPM: 1430.9
Min nTPM: 139.4
Std nTPM: 154.1
Median nTPM: 310.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1430.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 879.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 825.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 688.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 625.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 581.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 556.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 538.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 527.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 520.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 518.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 178.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 178.3
FF:10158-103A5 76 years, female 178.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 310.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 311.0
Samples: 4

Max nTPM: 324.7
Min nTPM: 289.0
Sample A Male 324.7
Sample B Male 320.5
Sample C Female 309.6
Sample D Female 289.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 19.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 19.7
68844845 Antisense, RP_050222_02_E10, Mouse strain C57BL/6J (56 days, male) 19.7

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