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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:300.0 nTPM
HPA:300.0 nTPM
GTEx:346.2 nTPM
FANTOM5:281.5 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 300.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 261.9
2194 Female, age 79, both hemispheres 299.1
2565 Male, age 75, midline 260.0
2816 Male, age 47, midline 259.7
1981 Female, age 72, midline 254.4
2048 Male, age 55, midline 236.1
Cervical spinal cord, dorsal horn
nTPM: 250.8
2173 Female, age 72, unknown 290.0
2296 Male, age 66, both hemispheres 278.4
2069 Male, age 47, both hemispheres 243.0
2297 Male, age 75, both hemispheres 242.4
1877 Male, age 55, unknown 236.7
2721 Male, age 90, both hemispheres 214.4
Cervical spinal cord, ventral horn
nTPM: 300.0
2480 Male, age 75, both hemispheres 337.6
2820 Female, age 79, both hemispheres 321.7
2809 Male, age 90, both hemispheres 308.4
2295 Male, age 66, both hemispheres 297.9
2068 Male, age 55, unknown 291.4
2098 Female, age 72, unknown 243.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 346.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 346.2
Samples: 159

Max nTPM: 890.1
Min nTPM: 142.6
Std nTPM: 103.2
Median nTPM: 336.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 890.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 627.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 567.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 562.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 561.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 555.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 550.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 549.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 543.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 537.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 502.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 498.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 497.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 496.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 493.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 486.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 484.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 483.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 460.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 458.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 457.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 452.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 451.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 445.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 436.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 436.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 435.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 434.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 427.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 426.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 423.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 421.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 416.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 415.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 409.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 407.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 406.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 403.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 397.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 396.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 394.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 392.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 389.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 384.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 382.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 382.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 382.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 377.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 375.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 374.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 372.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 370.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 370.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 370.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 369.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 368.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 367.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 365.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 363.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 363.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 361.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 360.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 360.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 359.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 357.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 355.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 354.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 353.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 353.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 352.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 350.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 346.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 346.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 344.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 344.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 339.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 339.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 338.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 337.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 336.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 336.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 335.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 332.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 332.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 329.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 328.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 326.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 325.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 324.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 324.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 324.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 321.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 321.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 315.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 314.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 306.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 305.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 303.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 300.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 298.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 298.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 298.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 297.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 296.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 291.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 291.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 289.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 289.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 287.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 287.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 284.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 283.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 282.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 281.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 281.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 277.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 276.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 275.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 274.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 274.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 271.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 271.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 270.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 270.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 267.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 264.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 262.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 260.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 260.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 260.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 258.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 251.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 250.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 250.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 248.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 240.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 238.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 236.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 235.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 235.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 235.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 234.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 233.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 233.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 229.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 228.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 228.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 226.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 224.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 221.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 216.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 214.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 209.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 200.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 198.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 186.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 171.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 152.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 142.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 281.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 281.5
FF:10181-103D1 60 years, female 344.9
FF:10159-103A6 76 years, female 218.2

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