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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:346.0 nTPM
HPA:346.0 nTPM
GTEx:400.4 nTPM
FANTOM5:151.9 Scaled Tags Per Million
Pig:51.0 nTPM
Mouse:252.1 nTPM
Allen mouse:7.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 346.0
Sample id Sample description nTPM
Amygdala
nTPM: 346.0
2814 Male, age 76, right hemisphere 374.3
2695 Female, age 67, right hemisphere 345.7
2517 Female, age 94, left hemisphere 338.5
1987 Female, age 91, left hemisphere 336.0
2514 Male, age 75, right hemisphere 335.7
Basal amygdala
nTPM: 324.0
1955 Male, age 76, both hemispheres 333.7
2110 Male, age 80, left hemisphere 330.6
2609 Male, age 75, right hemisphere 327.0
2243 Female, age 91, right hemisphere 322.2
2685 Female, age 94, left hemisphere 320.8
2827 Female, age 67, right hemisphere 309.4
Central amygdala
nTPM: 339.3
1905 Male, age 76, both hemispheres 367.3
2826 Female, age 94, left hemisphere 349.9
2239 Male, age 80, left hemisphere 328.7
2701 Female, age 91, right hemisphere 328.4
2515 Male, age 75, right hemisphere 322.1
Corticomedial amygdala
nTPM: 325.0
2429 Female, age 94, left hemisphere 328.8
2829 Male, age 80, left hemisphere 328.8
2242 Female, age 91, right hemisphere 328.1
2240 Male, age 76, both hemispheres 328.0
2428 Male, age 75, right hemisphere 323.4
2535 Female, age 67, right hemisphere 313.1
Lateral amygdala
nTPM: 325.0
1883 Male, age 76, both hemispheres 348.1
2534 Female, age 94, left hemisphere 338.0
2516 Male, age 75, right hemisphere 330.3
2255 Female, age 91, right hemisphere 313.4
2830 Female, age 67, right hemisphere 311.9
2256 Male, age 80, left hemisphere 308.4
Stria terminalis, bed nucleus
nTPM: 332.5
1974 Female, age 91, both hemispheres 347.0
2201 Male, age 74, unknown 328.5
2486 Female, age 94, both hemispheres 322.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 400.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 400.4
Samples: 152

Max nTPM: 1452.7
Min nTPM: 129.0
Std nTPM: 168.9
Median nTPM: 359.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1452.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1155.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 963.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 950.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 798.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 699.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 690.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 690.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 678.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 671.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 634.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 593.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 587.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 579.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 556.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 556.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 552.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 552.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 533.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 532.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 530.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 529.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 525.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 513.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 496.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 495.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 494.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 489.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 483.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 482.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 477.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 476.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 464.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 463.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 457.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 453.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 451.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 447.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 446.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 445.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 438.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 438.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 431.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 428.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 426.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 425.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 425.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 416.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 416.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 415.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 413.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 413.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 411.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 409.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 407.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 400.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 396.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 394.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 394.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 391.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 390.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 389.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 387.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 384.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 383.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 383.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 377.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 376.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 374.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 370.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 369.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 365.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 364.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 363.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 360.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 360.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 359.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 358.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 358.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 358.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 357.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 353.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 352.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 350.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 347.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 347.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 345.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 343.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 342.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 340.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 339.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 338.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 337.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 337.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 336.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 334.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 333.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 331.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 331.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 325.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 321.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 320.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 320.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 319.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 318.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 316.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 316.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 315.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 315.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 314.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 313.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 312.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 311.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 308.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 307.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 302.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 300.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 300.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 299.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 299.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 296.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 295.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 292.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 290.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 289.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 289.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 289.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 288.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 286.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 286.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 286.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 283.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 277.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 276.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 272.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 272.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 266.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 255.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 248.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 244.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 239.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 239.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 234.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 228.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 225.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 224.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 195.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 195.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 194.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 170.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 151.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 129.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 151.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.9
FF:10151-102I7 76 years, female 151.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.0
Pig sample Sample description nTPM
Amygdala
nTPM: 51.1
Samples: 4

Max nTPM: 85.5
Min nTPM: 34.2
Sample A Female 85.5
Sample B Female 40.2
Sample C Male 44.3
Sample D Male 34.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 252.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 252.1
Samples: 4

Max nTPM: 271.1
Min nTPM: 235.4
Sample A Male 250.8
Sample B Male 251.2
Sample C Female 271.1
Sample D Female 235.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.1
69817270 Antisense, RP_050510_03_A05, Mouse strain C57BL/6J (56 days, male) 7.2
76115740 Antisense, RP_060620_02_C08, Mouse strain C57BL/6J (56 days, male) 7.0

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