BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:106.9 nTPM
HPA:106.9 nTPM
GTEx:63.6 nTPM
FANTOM5:283.1 Scaled Tags Per Million
Mouse:54.5 nTPM
Allen mouse:1.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045033
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 106.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 65.5
2288 Male, age 75, left hemisphere 83.7
2846 Female, age 79, unknown 70.7
2481 Female, age 94, left hemisphere 66.8
2290 Female, age 72, unknown 63.7
1854 Male, age 80, left hemisphere 62.9
1781 Male, age 74, unknown 60.1
2289 Male, age 61, right hemisphere 59.0
1857 Female, age 85, left hemisphere 56.9
Claustrum
nTPM: 74.3
1956 Male, age 74, unknown 95.9
2292 Female, age 85, both hemispheres 92.1
2392 Female, age 94, both hemispheres 82.8
2196 Female, age 79, unknown 72.0
2491 Male, age 75, both hemispheres 69.9
2198 Male, age 80, both hemispheres 68.8
2284 Female, age 91, both hemispheres 65.5
2568 Male, age 61, both hemispheres 62.5
2645 Female, age 72, unknown 59.0
Globus pallidus, externus
nTPM: 92.2
1996 Male, age 80, right hemisphere 115.1
2772 Female, age 79, unknown 102.5
2395 Male, age 75, both hemispheres 88.7
2646 Male, age 61, right hemisphere 78.0
2567 Female, age 72, unknown 76.5
Globus pallidus, internus
nTPM: 106.9
2111 Female, age 85, right hemisphere 140.9
2778 Female, age 91, both hemispheres 121.4
2287 Male, age 75, right hemisphere 119.3
1818 Male, age 74, unknown 104.4
2037 Male, age 80, right hemisphere 100.6
2566 Female, age 72, unknown 87.6
2483 Female, age 94, right hemisphere 74.1
Nucleus accumbens
nTPM: 73.9
2391 Female, age 94, left hemisphere 111.2
2286 Male, age 75, left hemisphere 81.3
2698 Female, age 72, unknown 78.2
2732 Male, age 80, right hemisphere 74.0
1806 Female, age 85, left hemisphere 64.5
1783 Male, age 74, unknown 63.3
2824 Male, age 61, right hemisphere 62.6
1856 Female, age 91, right hemisphere 56.1
Nucleus basalis of Meynert
nTPM: 70.5
2821 Male, age 75, both hemispheres 77.9
2393 Male, age 80, right hemisphere 70.2
2569 Male, age 61, both hemispheres 68.1
2484 Female, age 94, left hemisphere 65.7
Nucleus of the diagonal band
nTPM: 55.1
1812 Female, age 91, both hemispheres 60.7
2029 Male, age 61, right hemisphere 56.0
1979 Male, age 74, unknown 55.1
2195 Female, age 85, both hemispheres 52.3
2775 Male, age 80, right hemisphere 51.5
Olfactory tubercle
nTPM: 56.8
2856 Male, age 75, right hemisphere 58.7
1998 Female, age 91, both hemispheres 56.5
1846 Male, age 80, right hemisphere 56.1
2487 Female, age 94, left hemisphere 55.9
Putamen
nTPM: 66.6
1829 Male, age 74, unknown 76.6
2482 Female, age 94, left hemisphere 75.7
1937 Female, age 91, right hemisphere 69.6
2466 Female, age 79, unknown 63.8
2489 Female, age 72, unknown 63.8
2647 Male, age 75, left hemisphere 63.2
1838 Male, age 80, right hemisphere 53.3
Septal nuclei
nTPM: 61.8
2394 Male, age 61, left hemisphere 81.5
2199 Male, age 80, right hemisphere 65.4
2629 Female, age 94, right hemisphere 63.5
2059 Female, age 85, both hemispheres 57.1
2031 Female, age 72, unknown 57.0
2009 Female, age 91, both hemispheres 56.8
1960 Male, age 74, unknown 51.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 63.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.9
Samples: 246

Max nTPM: 274.1
Min nTPM: 8.6
Std nTPM: 29.6
Median nTPM: 35.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 274.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 157.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 140.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 133.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 130.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 123.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 117.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 109.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 102.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 99.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 94.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.4
Samples: 246

Max nTPM: 394.1
Min nTPM: 3.9
Std nTPM: 34.6
Median nTPM: 18.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 394.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 201.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 193.7
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 138.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 121.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 116.6
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 110.4
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 106.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 104.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 91.4
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 73.3
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 63.6
Samples: 205

Max nTPM: 340.3
Min nTPM: 13.0
Std nTPM: 40.1
Median nTPM: 54.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 340.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 314.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 162.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 158.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 147.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 140.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 139.0
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 133.3
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 131.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 120.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 119.3
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 283.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 80.1
FF:10164-103B2 76 years, female 80.1
Globus pallidus
Scaled Tags Per Million: 283.1
FF:10161-103A8 76 years, female 298.6
FF:10175-103C4 60 years, female 267.5
Nucleus accumbens
Scaled Tags Per Million: 72.5
FF:10037-101F1 23-56 years, mixed 72.5
Putamen
Scaled Tags Per Million: 59.9
FF:10176-103C5 60 years, female 59.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.5
Samples: 4

Max nTPM: 56.7
Min nTPM: 51.7
Sample A Male 56.7
Sample B Male 54.4
Sample C Female 55.1
Sample D Female 51.7
Septum
nTPM: 47.1
Samples: 4

Max nTPM: 62.2
Min nTPM: 33.1
Sample A Male 33.1
Sample B Male 41.6
Sample C Female 51.6
Sample D Female 62.2
Ventral forebrain
nTPM: 29.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 27.2
Sample A Male 31.9
Sample B Male 28.5
Sample C Female 27.2
Sample D Female 30.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
68546137 Antisense, RP_050120_02_A09, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.0
68546137 Antisense, RP_050120_02_A09, Mouse strain C57BL/6J (56 days, male) 1.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.