MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:89.1 nTPM
HPA:89.1 nTPM
GTEx:94.5 nTPM
FANTOM5:503.2 Scaled Tags Per Million
Mouse:91.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 89.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.9
1870 Female, age 42, unknown 93.5
1830 Male, age 51, unknown 91.5
1833 Male, age 53, unknown 89.8
2411 Female, age 72, unknown 86.9
2019 Male, age 18, unknown 86.6
2828 Female, age 72, unknown 73.1
2219 Male, age 76, both hemispheres 70.0
1827 Male, age 72, unknown 68.5
2666 Male, age 74, left hemisphere 63.7
2586 Male, age 75, left hemisphere 55.2
Dorsal raphe nucleus
nTPM: 69.9
2750 Male, age 76, both hemispheres 91.1
2016 Female, age 72, unknown 72.9
1828 Male, age 53, unknown 66.9
2298 Female, age 72, unknown 61.3
2047 Male, age 72, unknown 57.3
Inferior colliculus
nTPM: 68.3
1848 Female, age 42, unknown 70.2
2097 Female, age 72, unknown 68.7
2849 Male, age 72, unknown 67.1
1890 Male, age 53, unknown 66.9
Median raphe nucleus
nTPM: 66.4
2220 Male, age 76, midline 66.4
Pedunculopontine tegmental nucleus
nTPM: 79.4
2338 Male, age 61, both hemispheres 83.2
2334 Male, age 80, both hemispheres 80.4
1921 Female, age 85, both hemispheres 74.7
Periaquaductal grey, anterior
nTPM: 63.5
1947 Male, age 18, unknown 67.1
2502 Female, age 75, unknown 66.2
1795 Male, age 51, unknown 57.2
Periaquaductal grey, dorsal
nTPM: 61.3
2464 Female, age 72, unknown 69.4
1831 Male, age 72, unknown 62.0
2850 Male, age 76, both hemispheres 59.6
1840 Male, age 53, unknown 54.3
Periaquaductal grey, lateral
nTPM: 65.1
2272 Male, age 74, both hemispheres 71.4
2053 Male, age 18, unknown 64.2
2140 Male, age 76, both hemispheres 59.6
Pretectal area
nTPM: 67.2
2316 Male, age 76, right hemisphere 79.8
1815 Male, age 53, unknown 76.5
2273 Male, age 74, both hemispheres 70.9
1817 Female, age 42, unknown 70.5
2407 Male, age 75, both hemispheres 68.6
2825 Male, age 18, unknown 66.7
2007 Male, age 72, unknown 66.3
2224 Female, age 72, unknown 64.3
2667 Female, age 75, unknown 59.9
1944 Female, age 72, unknown 59.4
1816 Male, age 51, unknown 56.6
Red nucleus
nTPM: 89.1
1865 Male, age 51, unknown 107.3
1821 Female, age 72, unknown 106.6
1904 Male, age 53, unknown 102.4
1954 Female, age 42, unknown 94.2
2823 Male, age 76, right hemisphere 91.8
2227 Male, age 72, unknown 91.3
2769 Male, age 72, unknown 90.9
2785 Male, age 18, unknown 88.7
2503 Female, age 72, unknown 88.3
2725 Female, age 75, unknown 75.7
2588 Male, age 74, left hemisphere 68.2
2584 Male, age 75, left hemisphere 63.6
Substantia nigra
nTPM: 69.5
2590 Female, age 75, unknown 80.2
2409 Female, age 72, unknown 79.6
1889 Female, age 72, unknown 74.3
1851 Male, age 51, unknown 72.0
2241 Male, age 72, unknown 69.3
2583 Male, age 75, right hemisphere 69.3
2699 Male, age 18, unknown 67.0
1941 Male, age 53, unknown 64.4
1916 Female, age 42, unknown 60.7
2665 Male, age 74, both hemispheres 58.4
Superior colliculus
nTPM: 74.3
1913 Female, age 42, unknown 91.3
1995 Male, age 72, unknown 91.1
1895 Male, age 76, right hemisphere 83.5
2587 Male, age 74, left hemisphere 80.9
1839 Male, age 51, unknown 76.1
2668 Female, age 75, unknown 74.1
1796 Male, age 53, unknown 65.9
2087 Female, age 72, unknown 62.4
2261 Male, age 18, unknown 60.7
2664 Male, age 75, both hemispheres 57.1
Ventral tegmental area
nTPM: 70.4
2223 Female, age 72, unknown 78.6
2410 Female, age 72, unknown 76.6
1915 Female, age 42, unknown 67.1
2021 Male, age 53, unknown 67.1
2218 Male, age 76, both hemispheres 67.0
1942 Male, age 51, unknown 65.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.5
Samples: 139

Max nTPM: 306.9
Min nTPM: 18.2
Std nTPM: 59.5
Median nTPM: 75.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 306.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 285.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 283.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 271.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 250.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 239.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 234.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 227.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 208.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 196.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 192.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 503.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 503.2
FF:10158-103A5 76 years, female 503.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.3
Samples: 4

Max nTPM: 95.0
Min nTPM: 88.2
Sample A Male 92.4
Sample B Male 89.4
Sample C Female 88.2
Sample D Female 95.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68546137 Antisense, RP_050120_02_A09, Mouse strain C57BL/6J (56 days, male) 0.7

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