MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:616.5 nTPM
HPA:616.5 nTPM
GTEx:654.6 nTPM
FANTOM5:264.9 Scaled Tags Per Million
Pig:61.3 nTPM
Mouse:643.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 616.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 586.7
2019 Male, age 18, unknown 606.2
2411 Female, age 72, unknown 603.2
1827 Male, age 72, unknown 598.1
1870 Female, age 42, unknown 591.0
2219 Male, age 76, both hemispheres 588.5
1833 Male, age 53, unknown 582.3
2828 Female, age 72, unknown 579.4
2666 Male, age 74, left hemisphere 575.8
1830 Male, age 51, unknown 575.4
2586 Male, age 75, left hemisphere 566.9
Dorsal raphe nucleus
nTPM: 602.1
2298 Female, age 72, unknown 634.4
1828 Male, age 53, unknown 601.7
2047 Male, age 72, unknown 595.3
2750 Male, age 76, both hemispheres 593.3
2016 Female, age 72, unknown 585.7
Inferior colliculus
nTPM: 602.1
2097 Female, age 72, unknown 630.8
1890 Male, age 53, unknown 608.3
1848 Female, age 42, unknown 591.8
2849 Male, age 72, unknown 577.5
Median raphe nucleus
nTPM: 589.0
2220 Male, age 76, midline 589.0
Pedunculopontine tegmental nucleus
nTPM: 597.5
2334 Male, age 80, both hemispheres 606.4
1921 Female, age 85, both hemispheres 600.0
2338 Male, age 61, both hemispheres 586.1
Periaquaductal grey, anterior
nTPM: 599.3
1947 Male, age 18, unknown 605.3
2502 Female, age 75, unknown 604.4
1795 Male, age 51, unknown 588.0
Periaquaductal grey, dorsal
nTPM: 585.3
1840 Male, age 53, unknown 593.6
2464 Female, age 72, unknown 585.5
2850 Male, age 76, both hemispheres 585.4
1831 Male, age 72, unknown 576.7
Periaquaductal grey, lateral
nTPM: 581.5
2272 Male, age 74, both hemispheres 591.1
2053 Male, age 18, unknown 578.4
2140 Male, age 76, both hemispheres 575.1
Pretectal area
nTPM: 602.2
2007 Male, age 72, unknown 628.0
1816 Male, age 51, unknown 618.3
1817 Female, age 42, unknown 614.9
1944 Female, age 72, unknown 612.1
2667 Female, age 75, unknown 604.6
2224 Female, age 72, unknown 604.5
1815 Male, age 53, unknown 604.1
2273 Male, age 74, both hemispheres 602.3
2825 Male, age 18, unknown 582.5
2316 Male, age 76, right hemisphere 579.2
2407 Male, age 75, both hemispheres 574.1
Red nucleus
nTPM: 595.4
1821 Female, age 72, unknown 623.3
2503 Female, age 72, unknown 602.2
2725 Female, age 75, unknown 599.6
2785 Male, age 18, unknown 598.3
2227 Male, age 72, unknown 598.1
2769 Male, age 72, unknown 596.7
1865 Male, age 51, unknown 596.2
1954 Female, age 42, unknown 590.9
1904 Male, age 53, unknown 588.4
2823 Male, age 76, right hemisphere 587.3
2588 Male, age 74, left hemisphere 585.6
2584 Male, age 75, left hemisphere 578.1
Substantia nigra
nTPM: 616.5
1916 Female, age 42, unknown 658.4
1851 Male, age 51, unknown 649.1
2241 Male, age 72, unknown 635.8
2409 Female, age 72, unknown 622.9
1889 Female, age 72, unknown 620.4
1941 Male, age 53, unknown 615.2
2699 Male, age 18, unknown 602.5
2665 Male, age 74, both hemispheres 599.9
2590 Female, age 75, unknown 590.8
2583 Male, age 75, right hemisphere 570.4
Superior colliculus
nTPM: 589.8
2587 Male, age 74, left hemisphere 605.9
1895 Male, age 76, right hemisphere 604.5
2087 Female, age 72, unknown 600.7
2668 Female, age 75, unknown 596.1
1796 Male, age 53, unknown 595.9
2261 Male, age 18, unknown 590.7
1839 Male, age 51, unknown 583.3
1913 Female, age 42, unknown 579.5
1995 Male, age 72, unknown 574.0
2664 Male, age 75, both hemispheres 567.7
Ventral tegmental area
nTPM: 604.5
1915 Female, age 42, unknown 629.8
2410 Female, age 72, unknown 622.3
2218 Male, age 76, both hemispheres 600.1
2223 Female, age 72, unknown 599.8
1942 Male, age 51, unknown 590.8
2021 Male, age 53, unknown 584.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 654.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 654.6
Samples: 139

Max nTPM: 1269.0
Min nTPM: 324.0
Std nTPM: 189.0
Median nTPM: 617.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1269.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1209.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1192.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1136.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1111.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1104.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1089.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1059.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1052.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1036.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 962.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 264.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 264.9
FF:10158-103A5 76 years, female 264.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.3
Pig sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 71.7
Min nTPM: 53.3
Sample A Female 60.7
Sample B Female 55.6
Sample C Male 71.7
Sample D Male 53.3
Periaqueductal gray
nTPM: 44.8
Samples: 3

Max nTPM: 48.2
Min nTPM: 39.6
Sample B Female 46.7
Sample C Male 48.2
Sample D Male 39.6
Substantia nigra
nTPM: 54.5
Samples: 4

Max nTPM: 76.8
Min nTPM: 38.1
Sample A Female 76.8
Sample B Female 47.6
Sample C Male 55.5
Sample D Male 38.1
Superior colliculi
nTPM: 61.3
Samples: 4

Max nTPM: 76.2
Min nTPM: 47.6
Sample A Female 67.8
Sample B Female 47.6
Sample C Male 76.2
Sample D Male 53.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 643.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 643.6
Samples: 4

Max nTPM: 746.4
Min nTPM: 536.6
Sample A Male 746.4
Sample B Male 616.3
Sample C Female 536.6
Sample D Female 674.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.