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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:614.4 nTPM
HPA:614.4 nTPM
GTEx:375.5 nTPM
FANTOM5:314.5 Scaled Tags Per Million
Pig:60.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 614.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 602.4
1981 Female, age 72, midline 631.2
2194 Female, age 79, both hemispheres 604.1
2565 Male, age 75, midline 599.4
2048 Male, age 55, midline 597.9
2816 Male, age 47, midline 579.4
Cervical spinal cord, dorsal horn
nTPM: 610.0
2173 Female, age 72, unknown 653.7
2069 Male, age 47, both hemispheres 627.2
2296 Male, age 66, both hemispheres 619.7
1877 Male, age 55, unknown 599.9
2297 Male, age 75, both hemispheres 585.4
2721 Male, age 90, both hemispheres 574.1
Cervical spinal cord, ventral horn
nTPM: 614.4
2480 Male, age 75, both hemispheres 653.4
2098 Female, age 72, unknown 623.2
2068 Male, age 55, unknown 623.0
2809 Male, age 90, both hemispheres 617.8
2295 Male, age 66, both hemispheres 589.8
2820 Female, age 79, both hemispheres 579.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 375.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 375.5
Samples: 159

Max nTPM: 669.4
Min nTPM: 190.8
Std nTPM: 90.0
Median nTPM: 358.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 669.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 659.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 591.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 575.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 564.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 564.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 560.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 558.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 546.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 525.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 512.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 510.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 504.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 501.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 500.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 500.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 498.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 494.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 489.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 489.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 489.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 486.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 486.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 485.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 482.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 481.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 476.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 474.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 462.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 462.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 454.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 447.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 445.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 444.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 442.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 440.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 439.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 437.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 436.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 434.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 433.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 427.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 426.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 425.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 419.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 417.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 417.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 412.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 411.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 410.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 407.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 401.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 401.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 400.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 399.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 394.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 393.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 391.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 387.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 385.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 385.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 382.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 380.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 379.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 379.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 378.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 376.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 373.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 373.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 370.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 368.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 364.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 364.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 364.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 363.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 363.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 363.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 360.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 359.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 358.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 358.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 356.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 356.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 355.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 355.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 353.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 352.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 349.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 349.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 348.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 346.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 345.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 344.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 342.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 342.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 341.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 341.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 341.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 336.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 335.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 334.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 333.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 331.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 330.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 329.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 328.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 327.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 326.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 326.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 325.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 325.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 324.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 323.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 322.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 321.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 319.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 318.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 318.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 317.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 312.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 310.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 310.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 307.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 304.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 303.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 302.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 301.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 301.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 300.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 295.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 293.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 292.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 292.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 289.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 288.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 288.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 283.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 282.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 282.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 279.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 279.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 276.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 275.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 274.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 267.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 265.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 264.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 261.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 257.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 256.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 255.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 244.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 238.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 238.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 235.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 232.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 219.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 212.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 190.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 314.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 314.5
FF:10181-103D1 60 years, female 394.1
FF:10159-103A6 76 years, female 235.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 50.3
Samples: 4

Max nTPM: 52.9
Min nTPM: 44.5
Sample A Female 52.9
Sample B Female 52.6
Sample C Male 51.1
Sample D Male 44.5
Ventral spinal cord
nTPM: 60.7
Samples: 4

Max nTPM: 64.4
Min nTPM: 54.4
Sample A Female 61.2
Sample B Female 64.4
Sample C Male 62.6
Sample D Male 54.4

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