We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ECHS1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • ECHS1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:108.0 nTPM
FANTOM5:39.3 Scaled Tags Per Million
Pig:34.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA021995Antibody HPA022476Antibody CAB003783
Glial cells MediumMediumMedium
Neuronal cells MediumMediumMedium




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 108.0
Samples: 246

Max nTPM: 303.2
Min nTPM: 59.2
Std nTPM: 31.1
Median nTPM: 101.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 303.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 242.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 217.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 210.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 202.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 189.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 178.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 174.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 172.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 170.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 167.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 166.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 163.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 162.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 161.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 158.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 157.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 155.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 153.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 152.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 150.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 150.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 147.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 145.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 145.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 144.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 143.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 143.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 142.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 140.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 140.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 139.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 137.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 137.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 136.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 135.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 135.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 133.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 133.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 132.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 132.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 131.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 130.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 130.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 130.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 128.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 127.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 126.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 126.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 125.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 124.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 123.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 123.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 123.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 122.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 122.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 122.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 122.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 122.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 120.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 120.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 119.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 119.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 119.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 118.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 118.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 117.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 116.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 115.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 115.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 115.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 115.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 115.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 114.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 114.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 114.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 114.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 113.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 113.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 113.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 113.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 112.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 112.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 111.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 111.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 111.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 111.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 111.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 111.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 111.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 111.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 111.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 111.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 110.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 110.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 110.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 109.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 109.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 109.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 109.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 109.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 108.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 107.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 107.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 107.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 107.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 106.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 106.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 106.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 105.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 105.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 105.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 105.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 104.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 104.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 104.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 103.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 103.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 103.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 102.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 102.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 102.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 101.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 101.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 101.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 101.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 100.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 100.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 99.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 99.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 99.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 99.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 98.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 98.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 98.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 97.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 97.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 97.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 96.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 96.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 96.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 96.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 96.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 96.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 96.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 95.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 95.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 95.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 95.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 95.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 95.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 95.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 94.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 94.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 94.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 94.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 93.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 93.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 93.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 93.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 93.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 92.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 92.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 92.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 92.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 91.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 91.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 91.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 91.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 91.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 90.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 90.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 90.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 90.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 89.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 89.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 88.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 88.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 88.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 87.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 87.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 87.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 87.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 86.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 86.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 86.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 86.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 86.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 86.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 86.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 85.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 85.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 85.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 85.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 84.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 84.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 83.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 83.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 83.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 83.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 83.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 83.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 82.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 82.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 82.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 82.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 82.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 81.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 81.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 81.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 81.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 81.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 80.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 80.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 79.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 79.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 79.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 79.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 79.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 78.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 78.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 77.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 77.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 77.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 76.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 76.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 76.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 76.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 75.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 75.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 74.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 74.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 73.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 71.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 71.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 70.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 70.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 70.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 70.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 69.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 67.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 67.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 66.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 65.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 59.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 59.2
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 39.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.3
FF:10164-103B2 76 years, female 39.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.0
Pig sample Sample description nTPM
Caudate
nTPM: 34.0
Samples: 4

Max nTPM: 39.3
Min nTPM: 28.1
Sample A Female 30.3
Sample B Female 39.3
Sample C Male 38.4
Sample D Male 28.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.