BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.2 nTPM
HPA:73.2 nTPM
GTEx:78.2 nTPM
FANTOM5:25.1 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 73.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 71.4
1857 Female, age 85, left hemisphere 74.3
2290 Female, age 72, unknown 74.3
2846 Female, age 79, unknown 72.9
1854 Male, age 80, left hemisphere 71.7
2481 Female, age 94, left hemisphere 70.4
2288 Male, age 75, left hemisphere 70.0
1781 Male, age 74, unknown 69.4
2289 Male, age 61, right hemisphere 68.2
Claustrum
nTPM: 71.4
2568 Male, age 61, both hemispheres 73.6
2645 Female, age 72, unknown 73.5
2284 Female, age 91, both hemispheres 73.3
2491 Male, age 75, both hemispheres 73.2
2198 Male, age 80, both hemispheres 72.9
2292 Female, age 85, both hemispheres 69.5
1956 Male, age 74, unknown 69.0
2196 Female, age 79, unknown 68.9
2392 Female, age 94, both hemispheres 68.2
Globus pallidus, externus
nTPM: 70.8
2567 Female, age 72, unknown 72.5
1996 Male, age 80, right hemisphere 72.0
2772 Female, age 79, unknown 71.1
2395 Male, age 75, both hemispheres 69.4
2646 Male, age 61, right hemisphere 69.0
Globus pallidus, internus
nTPM: 70.1
2483 Female, age 94, right hemisphere 72.9
2287 Male, age 75, right hemisphere 70.7
1818 Male, age 74, unknown 70.5
2566 Female, age 72, unknown 70.4
2111 Female, age 85, right hemisphere 69.7
2037 Male, age 80, right hemisphere 68.7
2778 Female, age 91, both hemispheres 67.8
Nucleus accumbens
nTPM: 71.8
1806 Female, age 85, left hemisphere 75.3
1856 Female, age 91, right hemisphere 74.3
1783 Male, age 74, unknown 73.7
2824 Male, age 61, right hemisphere 72.2
2286 Male, age 75, left hemisphere 72.0
2698 Female, age 72, unknown 70.1
2732 Male, age 80, right hemisphere 68.9
2391 Female, age 94, left hemisphere 67.9
Nucleus basalis of Meynert
nTPM: 70.2
2569 Male, age 61, both hemispheres 72.4
2484 Female, age 94, left hemisphere 70.3
2393 Male, age 80, right hemisphere 70.0
2821 Male, age 75, both hemispheres 68.1
Nucleus of the diagonal band
nTPM: 73.1
2029 Male, age 61, right hemisphere 76.4
2775 Male, age 80, right hemisphere 74.8
1812 Female, age 91, both hemispheres 73.2
2195 Female, age 85, both hemispheres 70.7
1979 Male, age 74, unknown 70.3
Olfactory tubercle
nTPM: 73.2
1998 Female, age 91, both hemispheres 74.5
2487 Female, age 94, left hemisphere 73.0
1846 Male, age 80, right hemisphere 72.8
2856 Male, age 75, right hemisphere 72.3
Putamen
nTPM: 71.9
2647 Male, age 75, left hemisphere 75.6
1937 Female, age 91, right hemisphere 72.6
2466 Female, age 79, unknown 72.3
1838 Male, age 80, right hemisphere 71.4
2489 Female, age 72, unknown 71.2
2482 Female, age 94, left hemisphere 70.5
1829 Male, age 74, unknown 69.6
Septal nuclei
nTPM: 71.0
1960 Male, age 74, unknown 74.0
2059 Female, age 85, both hemispheres 72.2
2031 Female, age 72, unknown 71.9
2394 Male, age 61, left hemisphere 71.1
2009 Female, age 91, both hemispheres 70.5
2629 Female, age 94, right hemisphere 68.9
2199 Male, age 80, right hemisphere 68.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 78.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 71.0
Samples: 246

Max nTPM: 146.8
Min nTPM: 27.9
Std nTPM: 19.5
Median nTPM: 67.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 146.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 135.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 134.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 129.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 128.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 120.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 119.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 119.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 118.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 118.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 112.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 78.2
Samples: 246

Max nTPM: 172.2
Min nTPM: 22.2
Std nTPM: 23.9
Median nTPM: 76.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 172.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 148.8
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 143.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 142.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 141.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 139.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 130.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 129.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 128.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 127.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 127.1
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Brain - Putamen (basal ganglia)
Average nTPM: 77.5
Samples: 205

Max nTPM: 144.6
Min nTPM: 40.1
Std nTPM: 18.6
Median nTPM: 75.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 144.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 134.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 131.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 125.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 121.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 117.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 116.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 112.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 112.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 112.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 111.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.1
FF:10164-103B2 76 years, female 22.1
Globus pallidus
Scaled Tags Per Million: 18.0
FF:10175-103C4 60 years, female 22.1
FF:10161-103A8 76 years, female 13.9
Nucleus accumbens
Scaled Tags Per Million: 17.7
FF:10037-101F1 23-56 years, mixed 17.7
Putamen
Scaled Tags Per Million: 25.1
FF:10176-103C5 60 years, female 25.1

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