MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:71.7 nTPM
HPA:71.7 nTPM
GTEx:61.9 nTPM
FANTOM5:13.0 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.8
2586 Male, age 75, left hemisphere 79.5
2411 Female, age 72, unknown 72.1
2828 Female, age 72, unknown 71.2
1827 Male, age 72, unknown 70.8
2019 Male, age 18, unknown 70.2
2666 Male, age 74, left hemisphere 69.9
1870 Female, age 42, unknown 69.4
1833 Male, age 53, unknown 68.3
2219 Male, age 76, both hemispheres 68.2
1830 Male, age 51, unknown 68.0
Dorsal raphe nucleus
nTPM: 70.4
2298 Female, age 72, unknown 71.6
2047 Male, age 72, unknown 71.4
1828 Male, age 53, unknown 70.5
2750 Male, age 76, both hemispheres 69.6
2016 Female, age 72, unknown 68.8
Inferior colliculus
nTPM: 69.7
1890 Male, age 53, unknown 70.6
2097 Female, age 72, unknown 70.2
2849 Male, age 72, unknown 69.1
1848 Female, age 42, unknown 68.9
Median raphe nucleus
nTPM: 69.5
2220 Male, age 76, midline 69.5
Pedunculopontine tegmental nucleus
nTPM: 68.6
1921 Female, age 85, both hemispheres 69.6
2334 Male, age 80, both hemispheres 68.8
2338 Male, age 61, both hemispheres 67.5
Periaquaductal grey, anterior
nTPM: 71.7
2502 Female, age 75, unknown 72.9
1795 Male, age 51, unknown 72.2
1947 Male, age 18, unknown 69.9
Periaquaductal grey, dorsal
nTPM: 68.6
1831 Male, age 72, unknown 69.7
1840 Male, age 53, unknown 69.7
2464 Female, age 72, unknown 68.4
2850 Male, age 76, both hemispheres 66.4
Periaquaductal grey, lateral
nTPM: 67.5
2053 Male, age 18, unknown 69.6
2272 Male, age 74, both hemispheres 66.5
2140 Male, age 76, both hemispheres 66.4
Pretectal area
nTPM: 70.6
2007 Male, age 72, unknown 75.1
1816 Male, age 51, unknown 74.1
1944 Female, age 72, unknown 73.0
1817 Female, age 42, unknown 72.6
1815 Male, age 53, unknown 70.8
2825 Male, age 18, unknown 70.8
2667 Female, age 75, unknown 69.6
2407 Male, age 75, both hemispheres 69.1
2224 Female, age 72, unknown 68.2
2316 Male, age 76, right hemisphere 67.9
2273 Male, age 74, both hemispheres 65.7
Red nucleus
nTPM: 70.2
2588 Male, age 74, left hemisphere 73.7
2584 Male, age 75, left hemisphere 72.7
2503 Female, age 72, unknown 72.4
2769 Male, age 72, unknown 71.0
2227 Male, age 72, unknown 70.6
2785 Male, age 18, unknown 70.5
1821 Female, age 72, unknown 70.0
2725 Female, age 75, unknown 69.8
1954 Female, age 42, unknown 69.2
1904 Male, age 53, unknown 69.1
1865 Male, age 51, unknown 67.7
2823 Male, age 76, right hemisphere 65.7
Substantia nigra
nTPM: 71.3
2665 Male, age 74, both hemispheres 75.8
2583 Male, age 75, right hemisphere 75.0
1916 Female, age 42, unknown 73.5
1851 Male, age 51, unknown 72.3
1941 Male, age 53, unknown 71.8
1889 Female, age 72, unknown 70.9
2409 Female, age 72, unknown 70.0
2590 Female, age 75, unknown 69.5
2699 Male, age 18, unknown 68.8
2241 Male, age 72, unknown 65.8
Superior colliculus
nTPM: 71.1
2664 Male, age 75, both hemispheres 78.2
2668 Female, age 75, unknown 72.6
2261 Male, age 18, unknown 72.3
2087 Female, age 72, unknown 71.9
1796 Male, age 53, unknown 71.8
1839 Male, age 51, unknown 69.9
1995 Male, age 72, unknown 69.4
2587 Male, age 74, left hemisphere 69.1
1913 Female, age 42, unknown 68.8
1895 Male, age 76, right hemisphere 67.2
Ventral tegmental area
nTPM: 71.6
1915 Female, age 42, unknown 73.1
1942 Male, age 51, unknown 73.1
2410 Female, age 72, unknown 72.5
2021 Male, age 53, unknown 70.7
2218 Male, age 76, both hemispheres 70.4
2223 Female, age 72, unknown 70.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.9
Samples: 139

Max nTPM: 133.5
Min nTPM: 29.5
Std nTPM: 17.6
Median nTPM: 59.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 133.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 109.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 104.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 103.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 102.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 97.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 97.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 92.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 91.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 90.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 90.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.0
FF:10158-103A5 76 years, female 13.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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