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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:71.2 nTPM
HPA:71.2 nTPM
GTEx:47.4 nTPM
FANTOM5:10.8 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 71.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 69.2
2565 Male, age 75, midline 71.9
1981 Female, age 72, midline 70.2
2816 Male, age 47, midline 69.1
2194 Female, age 79, both hemispheres 68.5
2048 Male, age 55, midline 66.4
Cervical spinal cord, dorsal horn
nTPM: 67.8
2173 Female, age 72, unknown 69.6
2296 Male, age 66, both hemispheres 68.5
1877 Male, age 55, unknown 68.2
2297 Male, age 75, both hemispheres 67.7
2069 Male, age 47, both hemispheres 66.8
2721 Male, age 90, both hemispheres 66.4
Cervical spinal cord, ventral horn
nTPM: 71.2
2480 Male, age 75, both hemispheres 74.0
2295 Male, age 66, both hemispheres 72.5
2809 Male, age 90, both hemispheres 72.4
2820 Female, age 79, both hemispheres 70.3
2068 Male, age 55, unknown 70.1
2098 Female, age 72, unknown 67.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 47.4
Samples: 159

Max nTPM: 92.1
Min nTPM: 24.0
Std nTPM: 12.4
Median nTPM: 46.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 92.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 79.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 79.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 76.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 75.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 73.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 69.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 68.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 68.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 68.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 67.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 67.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 66.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 65.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 65.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 63.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 63.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 63.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 62.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 62.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 61.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 61.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 59.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 59.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 58.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 58.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 58.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 57.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 57.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 56.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 56.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 56.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 56.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 55.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 55.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 55.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 55.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 55.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 55.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 55.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 55.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 54.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 53.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 53.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 53.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 53.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 53.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 53.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 53.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 53.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 52.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 52.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 52.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 52.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 51.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 51.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 50.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 50.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 50.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 50.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 50.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 50.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 50.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 49.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 49.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 49.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 48.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 48.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 48.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 47.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 47.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 47.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 47.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 47.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 47.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 46.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 46.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 46.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 46.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 45.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 45.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 45.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 45.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 45.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 45.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 45.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 44.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 44.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 44.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 44.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 44.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 44.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 44.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 43.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 43.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 43.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 42.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 42.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 42.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 41.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 41.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 41.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 41.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 40.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 40.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 40.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 40.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 40.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 40.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 40.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 39.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 39.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 39.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 39.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 39.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 39.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 39.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 39.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 39.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 38.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 38.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 38.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 38.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 38.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 37.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 37.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 37.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 36.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 36.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 36.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 35.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 34.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 34.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 34.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 34.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 34.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 33.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 33.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 33.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 33.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 33.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 31.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 30.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 29.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 29.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 29.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 28.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 28.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 28.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 27.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 27.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 26.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 25.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 24.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 24.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 24.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 24.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 10.8
FF:10181-103D1 60 years, female 11.9
FF:10159-103A6 76 years, female 9.8

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