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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:244.8 nTPM
HPA:244.8 nTPM
GTEx:464.1 nTPM
FANTOM5:799.9 Scaled Tags Per Million
Pig:368.2 nTPM
Mouse:1039.7 nTPM
Allen mouse:17.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 244.8
Sample id Sample description nTPM
Amygdala
nTPM: 95.8
2517 Female, age 94, left hemisphere 160.2
1987 Female, age 91, left hemisphere 132.0
2814 Male, age 76, right hemisphere 95.1
2514 Male, age 75, right hemisphere 70.4
2695 Female, age 67, right hemisphere 21.2
Basal amygdala
nTPM: 176.8
2243 Female, age 91, right hemisphere 297.3
2685 Female, age 94, left hemisphere 243.0
2110 Male, age 80, left hemisphere 239.5
1955 Male, age 76, both hemispheres 121.4
2827 Female, age 67, right hemisphere 95.3
2609 Male, age 75, right hemisphere 64.4
Central amygdala
nTPM: 112.3
2239 Male, age 80, left hemisphere 212.3
2826 Female, age 94, left hemisphere 124.7
2701 Female, age 91, right hemisphere 105.3
1905 Male, age 76, both hemispheres 77.7
2515 Male, age 75, right hemisphere 41.5
Corticomedial amygdala
nTPM: 200.9
2829 Male, age 80, left hemisphere 292.0
2242 Female, age 91, right hemisphere 286.0
2429 Female, age 94, left hemisphere 232.9
2535 Female, age 67, right hemisphere 189.7
2240 Male, age 76, both hemispheres 129.2
2428 Male, age 75, right hemisphere 75.4
Lateral amygdala
nTPM: 108.0
2534 Female, age 94, left hemisphere 220.3
1883 Male, age 76, both hemispheres 145.1
2256 Male, age 80, left hemisphere 116.6
2255 Female, age 91, right hemisphere 89.9
2516 Male, age 75, right hemisphere 45.2
2830 Female, age 67, right hemisphere 30.7
Stria terminalis, bed nucleus
nTPM: 244.8
1974 Female, age 91, both hemispheres 337.7
2486 Female, age 94, both hemispheres 289.7
2201 Male, age 74, unknown 107.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 464.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 464.1
Samples: 152

Max nTPM: 1831.9
Min nTPM: 96.4
Std nTPM: 324.3
Median nTPM: 359.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1831.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1379.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1375.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1260.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1252.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1239.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1164.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1113.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1068.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1035.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1026.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1004.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 993.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 984.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 973.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 971.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 963.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 894.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 883.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 882.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 855.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 823.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 808.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 806.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 800.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 766.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 761.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 753.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 751.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 712.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 704.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 697.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 686.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 680.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 676.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 663.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 660.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 651.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 622.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 602.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 596.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 583.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 582.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 579.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 570.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 551.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 535.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 531.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 529.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 526.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 526.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 513.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 505.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 502.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 495.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 490.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 484.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 467.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 464.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 456.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 455.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 450.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 435.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 432.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 428.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 425.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 409.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 403.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 397.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 397.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 395.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 383.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 370.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 367.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 362.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 361.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 356.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 352.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 351.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 347.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 346.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 339.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 339.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 328.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 327.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 320.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 314.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 313.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 307.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 303.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 302.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 301.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 300.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 287.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 283.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 278.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 276.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 276.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 271.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 259.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 251.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 249.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 248.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 243.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 239.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 235.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 231.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 231.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 229.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 229.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 224.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 222.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 215.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 214.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 211.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 207.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 200.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 198.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 196.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 195.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 194.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 193.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 193.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 192.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 191.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 182.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 180.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 178.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 174.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 170.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 169.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 169.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 168.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 158.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 151.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 150.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 142.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 142.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 138.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 138.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 137.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 135.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 131.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 128.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 126.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 124.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 121.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 119.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 113.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 108.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 103.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 96.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 799.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 799.9
FF:10151-102I7 76 years, female 799.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 368.2
Pig sample Sample description nTPM
Amygdala
nTPM: 368.3
Samples: 4

Max nTPM: 576.9
Min nTPM: 244.7
Sample A Female 576.9
Sample B Female 244.7
Sample C Male 268.1
Sample D Male 383.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1039.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 1039.7
Samples: 4

Max nTPM: 1062.7
Min nTPM: 994.2
Sample A Male 1053.2
Sample B Male 1048.8
Sample C Female 1062.7
Sample D Female 994.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 17.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.9
1128 Antisense, RP_Baylor_103128, Mouse strain C57BL/6J (56 days, male) 17.9
1127 Antisense, RP_Baylor_103128, Mouse strain C57BL/6J (56 days, male) 15.9

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