MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:109.2 nTPM
HPA:109.2 nTPM
GTEx:165.4 nTPM
FANTOM5:103.1 Scaled Tags Per Million
Pig:549.8 nTPM
Mouse:810.4 nTPM
Allen mouse:12.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 109.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.7
2019 Male, age 18, unknown 72.7
1827 Male, age 72, unknown 72.2
2411 Female, age 72, unknown 69.5
2219 Male, age 76, both hemispheres 56.3
2666 Male, age 74, left hemisphere 55.6
1870 Female, age 42, unknown 32.8
2828 Female, age 72, unknown 29.2
1833 Male, age 53, unknown 24.7
1830 Male, age 51, unknown 23.1
2586 Male, age 75, left hemisphere 21.4
Dorsal raphe nucleus
nTPM: 65.6
2298 Female, age 72, unknown 105.0
2750 Male, age 76, both hemispheres 84.0
2047 Male, age 72, unknown 74.8
1828 Male, age 53, unknown 50.5
2016 Female, age 72, unknown 13.5
Inferior colliculus
nTPM: 41.5
2097 Female, age 72, unknown 59.1
1848 Female, age 42, unknown 37.4
2849 Male, age 72, unknown 37.3
1890 Male, age 53, unknown 32.2
Median raphe nucleus
nTPM: 109.2
2220 Male, age 76, midline 109.2
Pedunculopontine tegmental nucleus
nTPM: 83.9
1921 Female, age 85, both hemispheres 95.3
2334 Male, age 80, both hemispheres 86.2
2338 Male, age 61, both hemispheres 70.2
Periaquaductal grey, anterior
nTPM: 45.0
1795 Male, age 51, unknown 72.2
2502 Female, age 75, unknown 37.0
1947 Male, age 18, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 42.9
1831 Male, age 72, unknown 52.0
1840 Male, age 53, unknown 44.4
2850 Male, age 76, both hemispheres 41.9
2464 Female, age 72, unknown 33.2
Periaquaductal grey, lateral
nTPM: 40.2
2272 Male, age 74, both hemispheres 60.3
2053 Male, age 18, unknown 34.6
2140 Male, age 76, both hemispheres 25.8
Pretectal area
nTPM: 84.4
1816 Male, age 51, unknown 160.8
1817 Female, age 42, unknown 138.5
2007 Male, age 72, unknown 133.7
1944 Female, age 72, unknown 122.6
1815 Male, age 53, unknown 109.4
2224 Female, age 72, unknown 77.1
2273 Male, age 74, both hemispheres 44.7
2825 Male, age 18, unknown 39.8
2407 Male, age 75, both hemispheres 38.2
2316 Male, age 76, right hemisphere 34.2
2667 Female, age 75, unknown 28.9
Red nucleus
nTPM: 22.1
2785 Male, age 18, unknown 76.9
2725 Female, age 75, unknown 54.3
2584 Male, age 75, left hemisphere 29.5
1821 Female, age 72, unknown 27.8
2823 Male, age 76, right hemisphere 16.5
2503 Female, age 72, unknown 15.0
1954 Female, age 42, unknown 12.0
2588 Male, age 74, left hemisphere 9.5
2769 Male, age 72, unknown 8.0
2227 Male, age 72, unknown 7.1
1865 Male, age 51, unknown 5.5
1904 Male, age 53, unknown 3.7
Substantia nigra
nTPM: 65.0
1941 Male, age 53, unknown 120.3
1889 Female, age 72, unknown 97.5
2665 Male, age 74, both hemispheres 75.4
2241 Male, age 72, unknown 65.3
1916 Female, age 42, unknown 64.5
2590 Female, age 75, unknown 58.2
2409 Female, age 72, unknown 51.8
1851 Male, age 51, unknown 50.9
2583 Male, age 75, right hemisphere 45.1
2699 Male, age 18, unknown 21.1
Superior colliculus
nTPM: 50.1
2087 Female, age 72, unknown 90.6
2261 Male, age 18, unknown 66.5
2668 Female, age 75, unknown 65.6
1796 Male, age 53, unknown 65.0
1895 Male, age 76, right hemisphere 59.3
2587 Male, age 74, left hemisphere 51.7
1839 Male, age 51, unknown 42.9
1913 Female, age 42, unknown 32.8
2664 Male, age 75, both hemispheres 16.4
1995 Male, age 72, unknown 10.2
Ventral tegmental area
nTPM: 57.8
2218 Male, age 76, both hemispheres 77.6
2223 Female, age 72, unknown 76.4
2410 Female, age 72, unknown 64.4
1915 Female, age 42, unknown 48.4
2021 Male, age 53, unknown 40.2
1942 Male, age 51, unknown 39.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 165.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.4
Samples: 139

Max nTPM: 1029.6
Min nTPM: 17.7
Std nTPM: 136.6
Median nTPM: 118.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1029.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 808.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 484.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 458.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 457.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 452.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 429.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 367.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 364.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 357.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 348.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.1
FF:10158-103A5 76 years, female 103.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 549.8
Pig sample Sample description nTPM
Midbrain
nTPM: 472.9
Samples: 4

Max nTPM: 850.2
Min nTPM: 255.4
Sample A Female 255.4
Sample B Female 267.0
Sample C Male 850.2
Sample D Male 519.1
Periaqueductal gray
nTPM: 286.2
Samples: 3

Max nTPM: 376.3
Min nTPM: 238.2
Sample B Female 244.2
Sample C Male 376.3
Sample D Male 238.2
Substantia nigra
nTPM: 286.8
Samples: 4

Max nTPM: 434.0
Min nTPM: 154.8
Sample A Female 434.0
Sample B Female 212.7
Sample C Male 345.5
Sample D Male 154.8
Superior colliculi
nTPM: 549.8
Samples: 4

Max nTPM: 860.6
Min nTPM: 400.5
Sample A Female 511.6
Sample B Female 400.5
Sample C Male 860.6
Sample D Male 426.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 810.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 810.4
Samples: 4

Max nTPM: 826.8
Min nTPM: 791.5
Sample A Male 791.5
Sample B Male 815.9
Sample C Female 826.8
Sample D Female 807.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
1127 Antisense, RP_Baylor_103128, Mouse strain C57BL/6J (56 days, male) 12.5
1128 Antisense, RP_Baylor_103128, Mouse strain C57BL/6J (56 days, male) 11.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.