MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:275.3 nTPM
HPA:275.3 nTPM
GTEx:254.6 nTPM
FANTOM5:119.1 Scaled Tags Per Million
Pig:170.5 nTPM
Mouse:252.6 nTPM
Allen mouse:11.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 275.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 265.4
2666 Male, age 74, left hemisphere 292.2
2019 Male, age 18, unknown 275.5
1827 Male, age 72, unknown 267.4
2219 Male, age 76, both hemispheres 266.8
2411 Female, age 72, unknown 263.1
1833 Male, age 53, unknown 260.4
2828 Female, age 72, unknown 259.7
2586 Male, age 75, left hemisphere 258.6
1870 Female, age 42, unknown 256.9
1830 Male, age 51, unknown 253.6
Dorsal raphe nucleus
nTPM: 263.2
2047 Male, age 72, unknown 270.8
2298 Female, age 72, unknown 268.2
1828 Male, age 53, unknown 266.8
2750 Male, age 76, both hemispheres 264.6
2016 Female, age 72, unknown 245.5
Inferior colliculus
nTPM: 260.5
2097 Female, age 72, unknown 263.7
2849 Male, age 72, unknown 261.6
1890 Male, age 53, unknown 259.6
1848 Female, age 42, unknown 257.0
Median raphe nucleus
nTPM: 275.3
2220 Male, age 76, midline 275.3
Pedunculopontine tegmental nucleus
nTPM: 267.5
2334 Male, age 80, both hemispheres 277.3
2338 Male, age 61, both hemispheres 264.7
1921 Female, age 85, both hemispheres 260.4
Periaquaductal grey, anterior
nTPM: 261.5
1795 Male, age 51, unknown 272.1
2502 Female, age 75, unknown 257.2
1947 Male, age 18, unknown 255.3
Periaquaductal grey, dorsal
nTPM: 256.6
2850 Male, age 76, both hemispheres 260.5
1831 Male, age 72, unknown 256.6
1840 Male, age 53, unknown 256.1
2464 Female, age 72, unknown 253.2
Periaquaductal grey, lateral
nTPM: 254.7
2272 Male, age 74, both hemispheres 262.6
2053 Male, age 18, unknown 255.2
2140 Male, age 76, both hemispheres 246.3
Pretectal area
nTPM: 271.6
1817 Female, age 42, unknown 298.2
1944 Female, age 72, unknown 290.6
1816 Male, age 51, unknown 290.1
2007 Male, age 72, unknown 283.8
1815 Male, age 53, unknown 280.4
2667 Female, age 75, unknown 271.7
2224 Female, age 72, unknown 263.4
2825 Male, age 18, unknown 255.9
2407 Male, age 75, both hemispheres 255.0
2273 Male, age 74, both hemispheres 254.3
2316 Male, age 76, right hemisphere 244.7
Red nucleus
nTPM: 258.4
2785 Male, age 18, unknown 270.8
1821 Female, age 72, unknown 270.3
2584 Male, age 75, left hemisphere 262.1
2823 Male, age 76, right hemisphere 257.2
1954 Female, age 42, unknown 256.6
2769 Male, age 72, unknown 256.6
2227 Male, age 72, unknown 256.2
2503 Female, age 72, unknown 256.0
1865 Male, age 51, unknown 255.8
2725 Female, age 75, unknown 254.5
1904 Male, age 53, unknown 253.6
2588 Male, age 74, left hemisphere 251.5
Substantia nigra
nTPM: 275.1
1916 Female, age 42, unknown 302.8
1889 Female, age 72, unknown 290.1
1941 Male, age 53, unknown 281.4
1851 Male, age 51, unknown 280.5
2665 Male, age 74, both hemispheres 278.1
2699 Male, age 18, unknown 265.9
2583 Male, age 75, right hemisphere 265.8
2409 Female, age 72, unknown 264.4
2241 Male, age 72, unknown 264.2
2590 Female, age 75, unknown 257.9
Superior colliculus
nTPM: 263.5
2668 Female, age 75, unknown 288.3
2087 Female, age 72, unknown 274.8
1796 Male, age 53, unknown 268.3
2261 Male, age 18, unknown 266.8
2587 Male, age 74, left hemisphere 265.6
1913 Female, age 42, unknown 259.4
1839 Male, age 51, unknown 258.2
1895 Male, age 76, right hemisphere 255.3
1995 Male, age 72, unknown 252.6
2664 Male, age 75, both hemispheres 245.4
Ventral tegmental area
nTPM: 270.7
2410 Female, age 72, unknown 287.3
1915 Female, age 42, unknown 280.3
2218 Male, age 76, both hemispheres 280.1
2223 Female, age 72, unknown 264.6
1942 Male, age 51, unknown 256.3
2021 Male, age 53, unknown 255.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 254.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 254.6
Samples: 139

Max nTPM: 501.9
Min nTPM: 123.5
Std nTPM: 76.9
Median nTPM: 234.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 501.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 495.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 453.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 420.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 415.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 403.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 397.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 392.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 387.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 377.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 377.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.1
FF:10158-103A5 76 years, female 119.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 170.5
Pig sample Sample description nTPM
Midbrain
nTPM: 159.2
Samples: 4

Max nTPM: 178.9
Min nTPM: 129.7
Sample A Female 178.9
Sample B Female 129.7
Sample C Male 178.8
Sample D Male 149.2
Periaqueductal gray
nTPM: 111.9
Samples: 3

Max nTPM: 137.2
Min nTPM: 98.3
Sample B Female 100.3
Sample C Male 137.2
Sample D Male 98.3
Substantia nigra
nTPM: 154.0
Samples: 4

Max nTPM: 241.6
Min nTPM: 91.4
Sample A Female 241.6
Sample B Female 113.6
Sample C Male 169.5
Sample D Male 91.4
Superior colliculi
nTPM: 170.5
Samples: 4

Max nTPM: 219.1
Min nTPM: 113.5
Sample A Female 219.1
Sample B Female 113.5
Sample C Male 207.2
Sample D Male 142.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 252.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 252.7
Samples: 4

Max nTPM: 291.5
Min nTPM: 219.3
Sample A Male 291.5
Sample B Male 241.3
Sample C Female 219.3
Sample D Female 258.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.3
393251 Antisense, RP_040804_02_H11, Mouse strain C57BL/6J (56 days, male) 11.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.