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ATP6V1F
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:269.5 nTPM
HPA:269.5 nTPM
GTEx:195.0 nTPM
FANTOM5:144.7 Scaled Tags Per Million
Pig:181.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 269.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 262.0
2194 Female, age 79, both hemispheres 269.8
2565 Male, age 75, midline 269.6
1981 Female, age 72, midline 269.5
2816 Male, age 47, midline 252.0
2048 Male, age 55, midline 249.3
Cervical spinal cord, dorsal horn
nTPM: 269.5
2069 Male, age 47, both hemispheres 278.3
2173 Female, age 72, unknown 273.1
2297 Male, age 75, both hemispheres 271.7
2721 Male, age 90, both hemispheres 270.5
2296 Male, age 66, both hemispheres 263.1
1877 Male, age 55, unknown 260.3
Cervical spinal cord, ventral horn
nTPM: 265.2
2480 Male, age 75, both hemispheres 268.2
2809 Male, age 90, both hemispheres 265.8
2068 Male, age 55, unknown 265.6
2820 Female, age 79, both hemispheres 265.1
2098 Female, age 72, unknown 264.2
2295 Male, age 66, both hemispheres 262.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 195.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 195.0
Samples: 159

Max nTPM: 566.2
Min nTPM: 97.9
Std nTPM: 47.7
Median nTPM: 187.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 566.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 313.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 290.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 286.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 283.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 278.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 278.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 273.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 273.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 268.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 258.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 256.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 248.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 247.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 245.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 243.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 241.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 240.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 238.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 237.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 237.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 236.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 234.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 234.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 233.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 232.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 226.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 225.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 224.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 222.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 219.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 219.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 218.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 218.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 218.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 217.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 216.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 215.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 214.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 214.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 214.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 214.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 213.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 213.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 211.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 210.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 208.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 208.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 208.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 208.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 208.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 207.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 207.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 206.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 206.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 206.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 205.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 204.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 203.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 201.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 201.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 200.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 199.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 197.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 196.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 195.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 195.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 194.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 193.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 193.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 192.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 192.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 192.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 191.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 190.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 189.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 189.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 188.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 188.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 187.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 187.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 187.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 186.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 184.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 184.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 184.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 183.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 183.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 182.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 182.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 182.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 182.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 181.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 180.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 179.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 179.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 179.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 179.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 178.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 178.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 177.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 177.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 177.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 176.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 176.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 175.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 175.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 175.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 174.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 173.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 173.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 172.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 171.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 171.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 170.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 170.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 170.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 170.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 170.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 169.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 167.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 167.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 167.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 166.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 166.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 165.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 165.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 165.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 165.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 163.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 158.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 157.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 157.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 157.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 155.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 155.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 155.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 151.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 148.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 147.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 146.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 146.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 144.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 144.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 143.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 141.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 138.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 138.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 136.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 136.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 135.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 135.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 135.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 135.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 133.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 129.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 116.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 97.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 144.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 144.7
FF:10181-103D1 60 years, female 172.2
FF:10159-103A6 76 years, female 117.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 181.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 131.3
Samples: 4

Max nTPM: 145.1
Min nTPM: 114.4
Sample A Female 145.1
Sample B Female 114.4
Sample C Male 126.2
Sample D Male 139.3
Ventral spinal cord
nTPM: 181.4
Samples: 4

Max nTPM: 198.5
Min nTPM: 158.9
Sample A Female 177.0
Sample B Female 191.0
Sample C Male 198.5
Sample D Male 158.9

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