BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:85.0 nTPM
HPA:85.0 nTPM
GTEx:68.8 nTPM
FANTOM5:93.8 Scaled Tags Per Million
Pig:53.7 nTPM
Mouse:38.2 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003228
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 85.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.0
2481 Female, age 94, left hemisphere 68.5
1857 Female, age 85, left hemisphere 67.6
2290 Female, age 72, unknown 65.6
1854 Male, age 80, left hemisphere 60.8
2288 Male, age 75, left hemisphere 56.1
2289 Male, age 61, right hemisphere 55.2
1781 Male, age 74, unknown 49.5
2846 Female, age 79, unknown 48.4
Claustrum
nTPM: 52.2
2196 Female, age 79, unknown 59.9
2568 Male, age 61, both hemispheres 53.2
1956 Male, age 74, unknown 52.9
2645 Female, age 72, unknown 52.2
2198 Male, age 80, both hemispheres 51.8
2292 Female, age 85, both hemispheres 51.7
2491 Male, age 75, both hemispheres 51.0
2284 Female, age 91, both hemispheres 49.7
2392 Female, age 94, both hemispheres 47.6
Globus pallidus, externus
nTPM: 85.0
2646 Male, age 61, right hemisphere 105.5
1996 Male, age 80, right hemisphere 94.2
2772 Female, age 79, unknown 82.2
2567 Female, age 72, unknown 76.7
2395 Male, age 75, both hemispheres 66.2
Globus pallidus, internus
nTPM: 76.7
2483 Female, age 94, right hemisphere 86.5
2037 Male, age 80, right hemisphere 83.7
1818 Male, age 74, unknown 75.7
2111 Female, age 85, right hemisphere 74.7
2287 Male, age 75, right hemisphere 74.4
2778 Female, age 91, both hemispheres 74.2
2566 Female, age 72, unknown 67.5
Nucleus accumbens
nTPM: 56.0
2391 Female, age 94, left hemisphere 61.2
1806 Female, age 85, left hemisphere 59.1
2698 Female, age 72, unknown 57.9
2286 Male, age 75, left hemisphere 55.8
1856 Female, age 91, right hemisphere 54.4
1783 Male, age 74, unknown 54.1
2732 Male, age 80, right hemisphere 53.8
2824 Male, age 61, right hemisphere 51.9
Nucleus basalis of Meynert
nTPM: 66.3
2569 Male, age 61, both hemispheres 114.7
2393 Male, age 80, right hemisphere 54.1
2484 Female, age 94, left hemisphere 51.5
2821 Male, age 75, both hemispheres 45.0
Nucleus of the diagonal band
nTPM: 53.3
2195 Female, age 85, both hemispheres 56.9
1979 Male, age 74, unknown 56.8
2775 Male, age 80, right hemisphere 53.6
1812 Female, age 91, both hemispheres 51.2
2029 Male, age 61, right hemisphere 47.8
Olfactory tubercle
nTPM: 52.8
1846 Male, age 80, right hemisphere 56.5
2856 Male, age 75, right hemisphere 56.3
2487 Female, age 94, left hemisphere 50.7
1998 Female, age 91, both hemispheres 47.5
Putamen
nTPM: 55.7
2489 Female, age 72, unknown 61.9
2647 Male, age 75, left hemisphere 59.2
2482 Female, age 94, left hemisphere 59.0
1829 Male, age 74, unknown 55.6
1937 Female, age 91, right hemisphere 54.1
2466 Female, age 79, unknown 51.3
1838 Male, age 80, right hemisphere 49.1
Septal nuclei
nTPM: 56.6
2059 Female, age 85, both hemispheres 66.3
2199 Male, age 80, right hemisphere 65.8
2394 Male, age 61, left hemisphere 63.9
1960 Male, age 74, unknown 51.2
2031 Female, age 72, unknown 51.0
2009 Female, age 91, both hemispheres 50.5
2629 Female, age 94, right hemisphere 47.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 68.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 68.8
Samples: 246

Max nTPM: 160.5
Min nTPM: 24.3
Std nTPM: 21.4
Median nTPM: 68.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 160.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 153.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 144.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 134.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 127.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 117.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 116.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 113.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 112.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 109.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 108.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 59.3
Samples: 246

Max nTPM: 126.7
Min nTPM: 15.2
Std nTPM: 18.6
Median nTPM: 56.0
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 126.7
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 121.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 118.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 116.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 116.0
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 115.3
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 112.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 106.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 102.6
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 100.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 99.5
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Brain - Putamen (basal ganglia)
Average nTPM: 65.3
Samples: 205

Max nTPM: 182.0
Min nTPM: 22.1
Std nTPM: 23.0
Median nTPM: 60.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 182.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 137.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 132.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 123.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 123.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 116.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 116.7
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 113.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 110.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 109.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 106.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 81.5
FF:10164-103B2 76 years, female 81.5
Globus pallidus
Scaled Tags Per Million: 82.4
FF:10161-103A8 76 years, female 88.3
FF:10175-103C4 60 years, female 76.5
Nucleus accumbens
Scaled Tags Per Million: 93.8
FF:10037-101F1 23-56 years, mixed 93.8
Putamen
Scaled Tags Per Million: 62.8
FF:10176-103C5 60 years, female 62.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.7
Pig sample Sample description nTPM
Caudate
nTPM: 50.9
Samples: 4

Max nTPM: 62.6
Min nTPM: 38.9
Sample A Female 38.9
Sample B Female 53.6
Sample C Male 62.6
Sample D Male 48.5
Putamen
nTPM: 53.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 44.3
Sample A Female 50.0
Sample B Female 44.3
Sample C Male 61.8
Sample D Male 58.9
Septum
nTPM: 42.5
Samples: 4

Max nTPM: 49.8
Min nTPM: 34.5
Sample A Female 44.3
Sample B Female 41.4
Sample C Male 49.8
Sample D Male 34.5
Ventral pallidum
nTPM: 49.0
Samples: 4

Max nTPM: 58.3
Min nTPM: 39.5
Sample A Female 39.5
Sample B Female 49.2
Sample C Male 58.3
Sample D Male 49.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.2
Samples: 4

Max nTPM: 39.9
Min nTPM: 36.5
Sample A Male 36.6
Sample B Male 39.8
Sample C Female 39.9
Sample D Female 36.5
Septum
nTPM: 35.1
Samples: 4

Max nTPM: 38.3
Min nTPM: 32.0
Sample A Male 32.0
Sample B Male 36.6
Sample C Female 38.3
Sample D Female 33.4
Ventral forebrain
nTPM: 34.8
Samples: 4

Max nTPM: 36.9
Min nTPM: 32.2
Sample A Male 34.6
Sample B Male 35.4
Sample C Female 32.2
Sample D Female 36.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
79756317 Antisense, RP_071204_02_E06, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.5
79756317 Antisense, RP_071204_02_E06, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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