MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:76.5 nTPM
HPA:76.5 nTPM
GTEx:62.6 nTPM
FANTOM5:101.6 Scaled Tags Per Million
Pig:72.7 nTPM
Mouse:35.0 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.1
2586 Male, age 75, left hemisphere 110.8
2828 Female, age 72, unknown 79.0
1870 Female, age 42, unknown 78.3
1830 Male, age 51, unknown 72.3
2411 Female, age 72, unknown 69.8
1833 Male, age 53, unknown 69.0
2666 Male, age 74, left hemisphere 65.0
1827 Male, age 72, unknown 63.9
2219 Male, age 76, both hemispheres 62.4
2019 Male, age 18, unknown 60.6
Dorsal raphe nucleus
nTPM: 70.8
2016 Female, age 72, unknown 75.8
2047 Male, age 72, unknown 74.1
2750 Male, age 76, both hemispheres 73.4
1828 Male, age 53, unknown 70.8
2298 Female, age 72, unknown 59.9
Inferior colliculus
nTPM: 69.0
1848 Female, age 42, unknown 73.3
1890 Male, age 53, unknown 69.0
2849 Male, age 72, unknown 68.8
2097 Female, age 72, unknown 64.7
Median raphe nucleus
nTPM: 64.3
2220 Male, age 76, midline 64.3
Pedunculopontine tegmental nucleus
nTPM: 66.9
2338 Male, age 61, both hemispheres 72.7
1921 Female, age 85, both hemispheres 65.3
2334 Male, age 80, both hemispheres 62.8
Periaquaductal grey, anterior
nTPM: 74.2
2502 Female, age 75, unknown 86.4
1947 Male, age 18, unknown 70.0
1795 Male, age 51, unknown 66.0
Periaquaductal grey, dorsal
nTPM: 70.1
1840 Male, age 53, unknown 84.2
2464 Female, age 72, unknown 69.5
1831 Male, age 72, unknown 64.4
2850 Male, age 76, both hemispheres 62.4
Periaquaductal grey, lateral
nTPM: 67.7
2053 Male, age 18, unknown 81.7
2140 Male, age 76, both hemispheres 65.7
2272 Male, age 74, both hemispheres 55.7
Pretectal area
nTPM: 64.5
2407 Male, age 75, both hemispheres 77.3
2667 Female, age 75, unknown 74.6
2825 Male, age 18, unknown 73.3
1815 Male, age 53, unknown 65.9
1817 Female, age 42, unknown 65.2
2224 Female, age 72, unknown 61.5
1944 Female, age 72, unknown 60.4
2273 Male, age 74, both hemispheres 60.0
1816 Male, age 51, unknown 59.4
2316 Male, age 76, right hemisphere 59.0
2007 Male, age 72, unknown 52.8
Red nucleus
nTPM: 76.5
2769 Male, age 72, unknown 86.3
2227 Male, age 72, unknown 84.5
1865 Male, age 51, unknown 84.3
1954 Female, age 42, unknown 83.6
2584 Male, age 75, left hemisphere 81.0
1904 Male, age 53, unknown 77.2
2588 Male, age 74, left hemisphere 77.0
1821 Female, age 72, unknown 76.9
2503 Female, age 72, unknown 76.7
2823 Male, age 76, right hemisphere 69.2
2725 Female, age 75, unknown 61.1
2785 Male, age 18, unknown 60.6
Substantia nigra
nTPM: 72.1
2699 Male, age 18, unknown 86.3
1851 Male, age 51, unknown 78.2
2665 Male, age 74, both hemispheres 76.8
1916 Female, age 42, unknown 76.1
2583 Male, age 75, right hemisphere 75.4
2590 Female, age 75, unknown 70.3
2241 Male, age 72, unknown 69.2
1889 Female, age 72, unknown 67.5
2409 Female, age 72, unknown 62.0
1941 Male, age 53, unknown 59.5
Superior colliculus
nTPM: 72.3
2664 Male, age 75, both hemispheres 102.7
1995 Male, age 72, unknown 83.6
1913 Female, age 42, unknown 77.6
1839 Male, age 51, unknown 70.4
1796 Male, age 53, unknown 69.9
2668 Female, age 75, unknown 66.3
2261 Male, age 18, unknown 66.2
2587 Male, age 74, left hemisphere 65.9
2087 Female, age 72, unknown 65.1
1895 Male, age 76, right hemisphere 55.8
Ventral tegmental area
nTPM: 73.6
2223 Female, age 72, unknown 86.3
2021 Male, age 53, unknown 73.6
1942 Male, age 51, unknown 73.4
1915 Female, age 42, unknown 71.4
2218 Male, age 76, both hemispheres 68.6
2410 Female, age 72, unknown 68.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.6
Samples: 139

Max nTPM: 173.1
Min nTPM: 8.2
Std nTPM: 25.9
Median nTPM: 56.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 173.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 161.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 156.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 136.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 119.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 117.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 117.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 107.1
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 103.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 98.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 96.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.6
FF:10158-103A5 76 years, female 101.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.7
Pig sample Sample description nTPM
Midbrain
nTPM: 72.3
Samples: 4

Max nTPM: 132.9
Min nTPM: 44.1
Sample A Female 132.9
Sample B Female 52.4
Sample C Male 59.7
Sample D Male 44.1
Periaqueductal gray
nTPM: 45.9
Samples: 3

Max nTPM: 49.1
Min nTPM: 39.7
Sample B Female 48.9
Sample C Male 49.1
Sample D Male 39.7
Substantia nigra
nTPM: 72.8
Samples: 4

Max nTPM: 80.8
Min nTPM: 67.1
Sample A Female 75.6
Sample B Female 67.5
Sample C Male 67.1
Sample D Male 80.8
Superior colliculi
nTPM: 57.7
Samples: 4

Max nTPM: 61.9
Min nTPM: 48.2
Sample A Female 61.9
Sample B Female 48.2
Sample C Male 60.1
Sample D Male 60.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 37.6
Min nTPM: 30.6
Sample A Male 30.6
Sample B Male 37.6
Sample C Female 36.5
Sample D Female 35.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
79756317 Antisense, RP_071204_02_E06, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.