MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:90.8 nTPM
HPA:90.8 nTPM
GTEx:62.9 nTPM
FANTOM5:182.0 Scaled Tags Per Million
Pig:88.2 nTPM
Mouse:42.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.5
2019 Male, age 18, unknown 96.0
1870 Female, age 42, unknown 94.5
1830 Male, age 51, unknown 93.0
1833 Male, age 53, unknown 91.0
2411 Female, age 72, unknown 87.8
2219 Male, age 76, both hemispheres 81.2
2666 Male, age 74, left hemisphere 73.3
2828 Female, age 72, unknown 70.9
1827 Male, age 72, unknown 68.0
2586 Male, age 75, left hemisphere 58.9
Dorsal raphe nucleus
nTPM: 65.6
2750 Male, age 76, both hemispheres 87.4
1828 Male, age 53, unknown 67.9
2016 Female, age 72, unknown 66.8
2047 Male, age 72, unknown 53.8
2298 Female, age 72, unknown 51.9
Inferior colliculus
nTPM: 67.7
1890 Male, age 53, unknown 72.1
1848 Female, age 42, unknown 69.9
2849 Male, age 72, unknown 66.7
2097 Female, age 72, unknown 62.2
Median raphe nucleus
nTPM: 60.7
2220 Male, age 76, midline 60.7
Pedunculopontine tegmental nucleus
nTPM: 79.3
2338 Male, age 61, both hemispheres 83.8
2334 Male, age 80, both hemispheres 79.3
1921 Female, age 85, both hemispheres 74.8
Periaquaductal grey, anterior
nTPM: 60.1
2502 Female, age 75, unknown 67.2
1947 Male, age 18, unknown 59.7
1795 Male, age 51, unknown 53.3
Periaquaductal grey, dorsal
nTPM: 58.6
2464 Female, age 72, unknown 69.0
1831 Male, age 72, unknown 62.8
2850 Male, age 76, both hemispheres 54.6
1840 Male, age 53, unknown 48.1
Periaquaductal grey, lateral
nTPM: 58.7
2053 Male, age 18, unknown 62.2
2272 Male, age 74, both hemispheres 59.8
2140 Male, age 76, both hemispheres 54.0
Pretectal area
nTPM: 66.6
1815 Male, age 53, unknown 79.8
1817 Female, age 42, unknown 73.9
2007 Male, age 72, unknown 73.5
2316 Male, age 76, right hemisphere 71.3
2667 Female, age 75, unknown 68.7
1944 Female, age 72, unknown 65.0
2407 Male, age 75, both hemispheres 62.9
2825 Male, age 18, unknown 61.7
1816 Male, age 51, unknown 60.4
2273 Male, age 74, both hemispheres 57.8
2224 Female, age 72, unknown 57.6
Red nucleus
nTPM: 90.8
1865 Male, age 51, unknown 102.1
1904 Male, age 53, unknown 101.5
2785 Male, age 18, unknown 100.1
1821 Female, age 72, unknown 99.6
1954 Female, age 42, unknown 97.7
2503 Female, age 72, unknown 94.3
2823 Male, age 76, right hemisphere 91.8
2227 Male, age 72, unknown 91.4
2769 Male, age 72, unknown 89.8
2588 Male, age 74, left hemisphere 85.0
2725 Female, age 75, unknown 68.9
2584 Male, age 75, left hemisphere 67.6
Substantia nigra
nTPM: 68.6
2409 Female, age 72, unknown 80.2
1889 Female, age 72, unknown 76.1
2590 Female, age 75, unknown 74.2
2583 Male, age 75, right hemisphere 69.7
1851 Male, age 51, unknown 69.4
2665 Male, age 74, both hemispheres 67.6
2699 Male, age 18, unknown 66.8
2241 Male, age 72, unknown 62.6
1941 Male, age 53, unknown 60.3
1916 Female, age 42, unknown 59.6
Superior colliculus
nTPM: 72.7
1913 Female, age 42, unknown 100.4
1995 Male, age 72, unknown 90.0
1895 Male, age 76, right hemisphere 79.1
2587 Male, age 74, left hemisphere 78.2
1839 Male, age 51, unknown 73.3
2668 Female, age 75, unknown 70.4
2087 Female, age 72, unknown 64.7
1796 Male, age 53, unknown 62.2
2261 Male, age 18, unknown 56.5
2664 Male, age 75, both hemispheres 51.6
Ventral tegmental area
nTPM: 69.4
2410 Female, age 72, unknown 79.9
2223 Female, age 72, unknown 77.2
2218 Male, age 76, both hemispheres 65.3
1915 Female, age 42, unknown 65.1
2021 Male, age 53, unknown 65.0
1942 Male, age 51, unknown 63.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.9
Samples: 139

Max nTPM: 162.7
Min nTPM: 24.2
Std nTPM: 27.8
Median nTPM: 55.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 162.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 158.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 153.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 134.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 133.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 129.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 126.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 121.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 119.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 111.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 109.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 182.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.0
FF:10158-103A5 76 years, female 182.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.2
Pig sample Sample description nTPM
Midbrain
nTPM: 88.2
Samples: 4

Max nTPM: 168.5
Min nTPM: 58.4
Sample A Female 168.5
Sample B Female 63.5
Sample C Male 62.5
Sample D Male 58.4
Periaqueductal gray
nTPM: 58.5
Samples: 3

Max nTPM: 61.6
Min nTPM: 54.5
Sample B Female 61.6
Sample C Male 54.5
Sample D Male 59.5
Substantia nigra
nTPM: 72.9
Samples: 4

Max nTPM: 100.7
Min nTPM: 56.8
Sample A Female 77.0
Sample B Female 57.1
Sample C Male 56.8
Sample D Male 100.7
Superior colliculi
nTPM: 71.3
Samples: 4

Max nTPM: 78.9
Min nTPM: 53.3
Sample A Female 78.9
Sample B Female 53.3
Sample C Male 77.8
Sample D Male 75.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.3
Samples: 4

Max nTPM: 46.7
Min nTPM: 37.9
Sample A Male 37.9
Sample B Male 40.8
Sample C Female 46.7
Sample D Female 43.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
73712762 Antisense, RP_051206_02_C11, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.