MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:94.0 nTPM
HPA:94.0 nTPM
GTEx:109.2 nTPM
FANTOM5:111.7 Scaled Tags Per Million
Mouse:80.1 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.8
2586 Male, age 75, left hemisphere 124.0
2666 Male, age 74, left hemisphere 111.4
1827 Male, age 72, unknown 94.9
2828 Female, age 72, unknown 93.8
2019 Male, age 18, unknown 93.5
2411 Female, age 72, unknown 87.9
1830 Male, age 51, unknown 84.7
1870 Female, age 42, unknown 84.5
1833 Male, age 53, unknown 83.8
2219 Male, age 76, both hemispheres 79.2
Dorsal raphe nucleus
nTPM: 81.3
1828 Male, age 53, unknown 84.8
2047 Male, age 72, unknown 83.6
2016 Female, age 72, unknown 80.9
2750 Male, age 76, both hemispheres 79.4
2298 Female, age 72, unknown 78.1
Inferior colliculus
nTPM: 84.6
1890 Male, age 53, unknown 88.6
2097 Female, age 72, unknown 85.6
1848 Female, age 42, unknown 82.9
2849 Male, age 72, unknown 81.3
Median raphe nucleus
nTPM: 80.4
2220 Male, age 76, midline 80.4
Pedunculopontine tegmental nucleus
nTPM: 80.1
2334 Male, age 80, both hemispheres 84.6
1921 Female, age 85, both hemispheres 79.6
2338 Male, age 61, both hemispheres 76.1
Periaquaductal grey, anterior
nTPM: 90.9
1947 Male, age 18, unknown 91.4
1795 Male, age 51, unknown 90.9
2502 Female, age 75, unknown 90.3
Periaquaductal grey, dorsal
nTPM: 80.9
1831 Male, age 72, unknown 85.3
2464 Female, age 72, unknown 85.2
1840 Male, age 53, unknown 78.1
2850 Male, age 76, both hemispheres 75.2
Periaquaductal grey, lateral
nTPM: 76.0
2053 Male, age 18, unknown 82.5
2140 Male, age 76, both hemispheres 74.6
2272 Male, age 74, both hemispheres 71.0
Pretectal area
nTPM: 88.8
1816 Male, age 51, unknown 107.1
2007 Male, age 72, unknown 101.7
1817 Female, age 42, unknown 98.6
1815 Male, age 53, unknown 98.2
2407 Male, age 75, both hemispheres 93.4
1944 Female, age 72, unknown 93.2
2825 Male, age 18, unknown 83.9
2316 Male, age 76, right hemisphere 78.8
2667 Female, age 75, unknown 78.4
2224 Female, age 72, unknown 72.6
2273 Male, age 74, both hemispheres 70.8
Red nucleus
nTPM: 94.0
2588 Male, age 74, left hemisphere 115.7
2584 Male, age 75, left hemisphere 102.1
2725 Female, age 75, unknown 98.9
1821 Female, age 72, unknown 95.2
2503 Female, age 72, unknown 95.2
2785 Male, age 18, unknown 92.2
1954 Female, age 42, unknown 90.6
1904 Male, age 53, unknown 90.5
1865 Male, age 51, unknown 89.3
2769 Male, age 72, unknown 87.9
2227 Male, age 72, unknown 87.8
2823 Male, age 76, right hemisphere 83.1
Substantia nigra
nTPM: 93.7
2665 Male, age 74, both hemispheres 104.8
2583 Male, age 75, right hemisphere 103.8
2590 Female, age 75, unknown 95.5
1851 Male, age 51, unknown 95.3
1889 Female, age 72, unknown 93.4
1941 Male, age 53, unknown 90.8
2409 Female, age 72, unknown 90.5
1916 Female, age 42, unknown 90.3
2241 Male, age 72, unknown 89.3
2699 Male, age 18, unknown 83.0
Superior colliculus
nTPM: 91.0
2664 Male, age 75, both hemispheres 106.7
2261 Male, age 18, unknown 96.3
2668 Female, age 75, unknown 94.9
2087 Female, age 72, unknown 92.4
1796 Male, age 53, unknown 90.9
2587 Male, age 74, left hemisphere 89.7
1913 Female, age 42, unknown 85.9
1995 Male, age 72, unknown 85.6
1839 Male, age 51, unknown 84.8
1895 Male, age 76, right hemisphere 82.8
Ventral tegmental area
nTPM: 85.4
2410 Female, age 72, unknown 90.6
1915 Female, age 42, unknown 88.3
1942 Male, age 51, unknown 84.1
2021 Male, age 53, unknown 83.6
2218 Male, age 76, both hemispheres 83.3
2223 Female, age 72, unknown 82.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 109.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.2
Samples: 139

Max nTPM: 219.1
Min nTPM: 49.1
Std nTPM: 36.8
Median nTPM: 96.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 219.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 208.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 205.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 205.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 203.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 190.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 189.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 184.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 179.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 178.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 177.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.7
FF:10158-103A5 76 years, female 111.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 80.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 80.1
Samples: 4

Max nTPM: 85.1
Min nTPM: 77.1
Sample A Male 79.1
Sample B Male 77.1
Sample C Female 85.1
Sample D Female 79.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
67765710 Antisense, RP_040916_01_E03, Mouse strain C57BL/6J (56 days, male) 4.2

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