MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:408.3 nTPM
HPA:408.3 nTPM
GTEx:445.0 nTPM
FANTOM5:450.3 Scaled Tags Per Million
Pig:241.2 nTPM
Mouse:4.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 408.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 360.4
1833 Male, age 53, unknown 417.4
1830 Male, age 51, unknown 411.8
2411 Female, age 72, unknown 405.8
1870 Female, age 42, unknown 395.0
2019 Male, age 18, unknown 373.4
2219 Male, age 76, both hemispheres 353.4
2828 Female, age 72, unknown 351.6
1827 Male, age 72, unknown 317.7
2666 Male, age 74, left hemisphere 305.5
2586 Male, age 75, left hemisphere 272.6
Dorsal raphe nucleus
nTPM: 320.8
2750 Male, age 76, both hemispheres 378.9
2016 Female, age 72, unknown 337.1
1828 Male, age 53, unknown 319.0
2298 Female, age 72, unknown 293.1
2047 Male, age 72, unknown 276.0
Inferior colliculus
nTPM: 324.2
2849 Male, age 72, unknown 339.6
1848 Female, age 42, unknown 332.0
1890 Male, age 53, unknown 314.3
2097 Female, age 72, unknown 310.7
Median raphe nucleus
nTPM: 287.9
2220 Male, age 76, midline 287.9
Pedunculopontine tegmental nucleus
nTPM: 351.8
2334 Male, age 80, both hemispheres 363.5
2338 Male, age 61, both hemispheres 358.1
1921 Female, age 85, both hemispheres 333.9
Periaquaductal grey, anterior
nTPM: 305.7
2502 Female, age 75, unknown 332.6
1947 Male, age 18, unknown 302.8
1795 Male, age 51, unknown 281.9
Periaquaductal grey, dorsal
nTPM: 292.6
2464 Female, age 72, unknown 338.3
1831 Male, age 72, unknown 292.3
2850 Male, age 76, both hemispheres 273.9
1840 Male, age 53, unknown 265.7
Periaquaductal grey, lateral
nTPM: 307.0
2272 Male, age 74, both hemispheres 338.2
2053 Male, age 18, unknown 312.9
2140 Male, age 76, both hemispheres 269.8
Pretectal area
nTPM: 314.6
2316 Male, age 76, right hemisphere 374.8
1815 Male, age 53, unknown 359.7
1817 Female, age 42, unknown 332.8
2825 Male, age 18, unknown 322.3
2407 Male, age 75, both hemispheres 318.8
2273 Male, age 74, both hemispheres 309.0
2007 Male, age 72, unknown 307.8
2224 Female, age 72, unknown 300.0
2667 Female, age 75, unknown 293.9
1944 Female, age 72, unknown 273.4
1816 Male, age 51, unknown 268.3
Red nucleus
nTPM: 408.3
1821 Female, age 72, unknown 476.1
1904 Male, age 53, unknown 457.4
2823 Male, age 76, right hemisphere 455.4
1865 Male, age 51, unknown 449.6
1954 Female, age 42, unknown 435.9
2503 Female, age 72, unknown 414.5
2769 Male, age 72, unknown 414.4
2227 Male, age 72, unknown 411.9
2785 Male, age 18, unknown 404.1
2725 Female, age 75, unknown 345.7
2588 Male, age 74, left hemisphere 334.1
2584 Male, age 75, left hemisphere 299.8
Substantia nigra
nTPM: 318.1
2590 Female, age 75, unknown 347.9
1851 Male, age 51, unknown 343.1
1889 Female, age 72, unknown 333.2
2409 Female, age 72, unknown 331.8
2699 Male, age 18, unknown 325.4
2583 Male, age 75, right hemisphere 317.0
2241 Male, age 72, unknown 307.2
1916 Female, age 42, unknown 294.5
2665 Male, age 74, both hemispheres 294.2
1941 Male, age 53, unknown 286.6
Superior colliculus
nTPM: 340.8
1995 Male, age 72, unknown 413.5
1895 Male, age 76, right hemisphere 400.1
1913 Female, age 42, unknown 399.6
2587 Male, age 74, left hemisphere 359.4
1839 Male, age 51, unknown 353.4
2668 Female, age 75, unknown 325.8
1796 Male, age 53, unknown 316.1
2087 Female, age 72, unknown 284.5
2261 Male, age 18, unknown 284.5
2664 Male, age 75, both hemispheres 270.9
Ventral tegmental area
nTPM: 332.2
2410 Female, age 72, unknown 394.5
2223 Female, age 72, unknown 342.9
1915 Female, age 42, unknown 324.9
2218 Male, age 76, both hemispheres 312.3
1942 Male, age 51, unknown 310.9
2021 Male, age 53, unknown 307.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 445.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 445.0
Samples: 139

Max nTPM: 1632.0
Min nTPM: 141.8
Std nTPM: 254.0
Median nTPM: 374.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1632.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1513.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1426.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1208.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1064.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 946.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 938.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 902.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 895.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 876.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 857.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 450.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 450.3
FF:10158-103A5 76 years, female 450.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 241.2
Pig sample Sample description nTPM
Midbrain
nTPM: 203.5
Samples: 4

Max nTPM: 260.8
Min nTPM: 132.5
Sample A Female 260.8
Sample B Female 228.2
Sample C Male 192.4
Sample D Male 132.5
Periaqueductal gray
nTPM: 241.2
Samples: 3

Max nTPM: 284.1
Min nTPM: 209.9
Sample B Female 209.9
Sample C Male 284.1
Sample D Male 229.7
Substantia nigra
nTPM: 183.1
Samples: 4

Max nTPM: 219.4
Min nTPM: 156.0
Sample A Female 219.4
Sample B Female 166.5
Sample C Male 190.4
Sample D Male 156.0
Superior colliculi
nTPM: 146.1
Samples: 4

Max nTPM: 182.0
Min nTPM: 78.5
Sample A Female 157.7
Sample B Female 78.5
Sample C Male 166.3
Sample D Male 182.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 5.7
Min nTPM: 3.7
Sample A Male 5.6
Sample B Male 4.2
Sample C Female 5.7
Sample D Female 3.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68522503 Antisense, RP_050118_02_B09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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