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RNASE1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:201.8 nTPM
HPA:201.8 nTPM
GTEx:188.0 nTPM
FANTOM5:421.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001140
Endocrine cells High
Enterocytes Not detected
Enterocytes - Microvilli Not detected
Goblet cells High
Paneth cells Not detected



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 201.8
overview
Male, age 65
Small intestine sample 232
nTPM: 144.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 167.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 279
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 216.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 188.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 188.0
Samples: 187

Max nTPM: 525.9
Min nTPM: 24.3
Std nTPM: 87.4
Median nTPM: 178.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 525.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 461.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 448.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 396.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 383.8
GTEX-1192X-2526-SM-59868 50-59 years, male 377.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 374.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 372.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 370.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 347.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 341.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 334.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 334.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 332.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 327.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 323.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 318.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 317.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 301.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 301.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 300.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 295.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 293.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 289.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 280.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 280.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 279.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 279.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 275.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 265.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 263.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 263.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 261.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 261.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 259.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 253.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 249.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 249.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 249.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 248.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 247.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 244.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 242.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 238.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 238.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 235.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 235.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 233.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 231.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 230.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 229.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 229.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 228.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 228.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 226.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 225.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 221.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 220.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 217.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 217.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 216.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 216.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 215.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 214.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 211.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 210.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 208.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 208.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 207.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 207.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 205.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 201.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 200.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 200.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 199.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 196.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 196.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 195.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 193.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 192.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 190.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 188.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 188.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 186.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 186.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 185.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 184.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 184.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 184.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 182.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 181.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 180.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 179.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 178.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 178.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 177.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 177.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 173.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 172.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 172.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 167.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 167.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 166.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 165.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 165.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 162.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 161.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 159.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 156.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 153.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 153.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 153.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 152.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 149.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 148.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 148.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 148.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 146.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 145.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 145.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 144.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 144.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 144.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 143.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 142.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 142.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 141.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 140.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 139.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 138.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 136.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 136.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 135.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 135.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 133.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 132.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 132.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 130.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 130.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 127.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 126.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 124.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 123.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 123.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 122.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 118.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 116.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 116.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 115.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 113.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 112.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 110.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 109.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 108.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 105.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 105.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 102.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 102.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 100.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 99.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 99.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 99.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 98.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 98.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 96.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 95.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 95.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 94.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 94.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 93.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 86.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 84.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 79.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 78.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 75.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 74.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 64.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 64.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 55.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 53.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 53.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 50.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 47.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 45.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 41.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 31.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 24.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 421.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 421.2
FF:10024-101D6 15,40,85 years, mixed 421.2

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