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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:42.6 nTPM
HPA:42.6 nTPM
GTEx:37.2 nTPM
FANTOM5:135.8 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:85.2 nTPM
Allen mouse:8.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 42.6
Sample id Sample description nTPM
Amygdala
nTPM: 41.7
2695 Female, age 67, right hemisphere 59.0
2814 Male, age 76, right hemisphere 46.7
2514 Male, age 75, right hemisphere 41.3
1987 Female, age 91, left hemisphere 30.9
2517 Female, age 94, left hemisphere 30.8
Basal amygdala
nTPM: 38.5
2609 Male, age 75, right hemisphere 50.2
2827 Female, age 67, right hemisphere 45.6
2243 Female, age 91, right hemisphere 35.0
1955 Male, age 76, both hemispheres 34.4
2685 Female, age 94, left hemisphere 34.1
2110 Male, age 80, left hemisphere 31.6
Central amygdala
nTPM: 41.8
1905 Male, age 76, both hemispheres 50.8
2826 Female, age 94, left hemisphere 43.5
2515 Male, age 75, right hemisphere 42.8
2701 Female, age 91, right hemisphere 37.6
2239 Male, age 80, left hemisphere 34.2
Corticomedial amygdala
nTPM: 36.9
2428 Male, age 75, right hemisphere 50.7
2829 Male, age 80, left hemisphere 36.4
2429 Female, age 94, left hemisphere 35.2
2240 Male, age 76, both hemispheres 34.2
2535 Female, age 67, right hemisphere 33.2
2242 Female, age 91, right hemisphere 31.6
Lateral amygdala
nTPM: 42.6
2830 Female, age 67, right hemisphere 55.2
2516 Male, age 75, right hemisphere 46.9
1883 Male, age 76, both hemispheres 44.4
2255 Female, age 91, right hemisphere 38.7
2256 Male, age 80, left hemisphere 36.6
2534 Female, age 94, left hemisphere 33.7
Stria terminalis, bed nucleus
nTPM: 27.6
2201 Male, age 74, unknown 30.5
2486 Female, age 94, both hemispheres 28.6
1974 Female, age 91, both hemispheres 23.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 37.2
Samples: 152

Max nTPM: 101.5
Min nTPM: 16.5
Std nTPM: 11.6
Median nTPM: 34.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 101.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 73.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 73.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 71.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 64.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 60.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 60.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 59.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 58.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 55.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 55.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 54.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 53.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 53.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 51.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 50.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 50.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 49.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 49.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 48.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 47.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 46.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 46.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 46.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 46.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 46.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 45.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 45.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 44.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 44.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 44.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 43.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 43.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 43.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 43.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 43.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 42.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 42.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 42.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 41.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 40.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 40.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 40.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 39.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 39.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 39.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 39.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 39.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 38.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 38.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 37.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 37.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 37.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 37.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 37.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 37.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 37.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 37.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 37.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 37.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 36.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 36.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 36.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 35.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 35.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 35.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 35.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 35.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 35.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 35.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 35.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 35.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 34.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 34.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 34.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 34.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 34.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 34.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 34.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 34.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 34.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 34.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 33.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 33.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 33.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 33.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 33.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 33.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 33.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 33.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 33.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 32.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 32.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 32.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 32.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 32.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 32.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 32.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 32.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 32.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 31.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 31.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 30.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 30.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 30.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 30.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 30.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 29.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 29.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 29.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 29.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 29.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 29.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 29.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 29.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 29.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 29.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 28.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 28.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 28.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 28.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 28.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 27.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 27.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 27.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 27.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 27.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 27.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 27.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 26.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 26.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 26.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 26.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 25.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 25.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 25.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 25.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 25.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 25.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 25.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 24.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 24.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 23.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 23.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 21.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 21.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 21.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 19.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 16.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 135.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 135.8
FF:10151-102I7 76 years, female 135.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.2
Pig sample Sample description nTPM
Amygdala
nTPM: 21.3
Samples: 4

Max nTPM: 22.4
Min nTPM: 19.4
Sample A Female 22.4
Sample B Female 21.6
Sample C Male 19.4
Sample D Male 21.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 85.2
Samples: 4

Max nTPM: 92.9
Min nTPM: 80.2
Sample A Male 82.4
Sample B Male 85.2
Sample C Female 92.9
Sample D Female 80.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.0
70429423 Antisense, RP_050614_01_F05, Mouse strain C57BL/6J (56 days, male) 10.1
74988453 Antisense, RP_060315_05_D08, Mouse strain C57BL/6J (56 days, male) 5.9

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