MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:63.0 nTPM
HPA:63.0 nTPM
GTEx:51.7 nTPM
FANTOM5:137.8 Scaled Tags Per Million
Pig:39.4 nTPM
Mouse:29.0 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.9
2019 Male, age 18, unknown 64.4
2666 Male, age 74, left hemisphere 57.6
2586 Male, age 75, left hemisphere 55.7
1830 Male, age 51, unknown 49.0
2828 Female, age 72, unknown 47.8
1833 Male, age 53, unknown 46.3
2411 Female, age 72, unknown 45.1
1870 Female, age 42, unknown 42.9
1827 Male, age 72, unknown 36.7
2219 Male, age 76, both hemispheres 33.8
Dorsal raphe nucleus
nTPM: 43.7
1828 Male, age 53, unknown 53.0
2047 Male, age 72, unknown 49.5
2016 Female, age 72, unknown 43.0
2750 Male, age 76, both hemispheres 39.3
2298 Female, age 72, unknown 33.7
Inferior colliculus
nTPM: 58.3
1890 Male, age 53, unknown 80.4
1848 Female, age 42, unknown 57.7
2097 Female, age 72, unknown 51.9
2849 Male, age 72, unknown 43.3
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Pedunculopontine tegmental nucleus
nTPM: 47.9
2338 Male, age 61, both hemispheres 50.4
1921 Female, age 85, both hemispheres 49.0
2334 Male, age 80, both hemispheres 44.3
Periaquaductal grey, anterior
nTPM: 35.2
2502 Female, age 75, unknown 38.5
1795 Male, age 51, unknown 33.6
1947 Male, age 18, unknown 33.5
Periaquaductal grey, dorsal
nTPM: 40.4
2464 Female, age 72, unknown 45.0
1831 Male, age 72, unknown 43.7
2850 Male, age 76, both hemispheres 39.2
1840 Male, age 53, unknown 33.9
Periaquaductal grey, lateral
nTPM: 38.0
2140 Male, age 76, both hemispheres 42.3
2053 Male, age 18, unknown 39.5
2272 Male, age 74, both hemispheres 32.2
Pretectal area
nTPM: 42.9
1817 Female, age 42, unknown 66.6
2007 Male, age 72, unknown 51.2
2316 Male, age 76, right hemisphere 45.5
1944 Female, age 72, unknown 45.1
1815 Male, age 53, unknown 44.7
2667 Female, age 75, unknown 43.1
1816 Male, age 51, unknown 42.4
2825 Male, age 18, unknown 35.4
2224 Female, age 72, unknown 34.9
2407 Male, age 75, both hemispheres 34.1
2273 Male, age 74, both hemispheres 29.1
Red nucleus
nTPM: 63.0
1821 Female, age 72, unknown 77.6
2588 Male, age 74, left hemisphere 77.0
1954 Female, age 42, unknown 74.7
1865 Male, age 51, unknown 71.9
2769 Male, age 72, unknown 67.8
1904 Male, age 53, unknown 65.9
2227 Male, age 72, unknown 63.7
2823 Male, age 76, right hemisphere 58.4
2785 Male, age 18, unknown 56.8
2503 Female, age 72, unknown 55.8
2584 Male, age 75, left hemisphere 44.1
2725 Female, age 75, unknown 42.4
Substantia nigra
nTPM: 55.3
2665 Male, age 74, both hemispheres 82.5
2699 Male, age 18, unknown 58.7
2590 Female, age 75, unknown 56.6
1851 Male, age 51, unknown 56.2
2583 Male, age 75, right hemisphere 55.4
1916 Female, age 42, unknown 52.9
1889 Female, age 72, unknown 52.5
2241 Male, age 72, unknown 49.2
2409 Female, age 72, unknown 48.3
1941 Male, age 53, unknown 40.8
Superior colliculus
nTPM: 44.2
2668 Female, age 75, unknown 55.5
1995 Male, age 72, unknown 48.5
2087 Female, age 72, unknown 46.2
2664 Male, age 75, both hemispheres 45.7
1913 Female, age 42, unknown 43.3
2587 Male, age 74, left hemisphere 42.3
1895 Male, age 76, right hemisphere 41.9
1839 Male, age 51, unknown 41.5
2261 Male, age 18, unknown 38.5
1796 Male, age 53, unknown 38.1
Ventral tegmental area
nTPM: 44.0
2410 Female, age 72, unknown 50.3
2218 Male, age 76, both hemispheres 46.8
2223 Female, age 72, unknown 45.7
1915 Female, age 42, unknown 42.1
2021 Male, age 53, unknown 40.6
1942 Male, age 51, unknown 38.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.7
Samples: 139

Max nTPM: 146.2
Min nTPM: 11.9
Std nTPM: 23.9
Median nTPM: 47.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 146.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 134.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 132.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 122.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 121.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 113.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 107.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 102.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 99.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 99.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 96.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.8
FF:10158-103A5 76 years, female 137.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.4
Pig sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 83.7
Min nTPM: 22.8
Sample A Female 83.7
Sample B Female 22.8
Sample C Male 26.0
Sample D Male 25.0
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 23.0
Min nTPM: 22.0
Sample B Female 22.0
Sample C Male 23.0
Sample D Male 23.0
Substantia nigra
nTPM: 32.2
Samples: 4

Max nTPM: 41.7
Min nTPM: 25.3
Sample A Female 35.7
Sample B Female 25.3
Sample C Male 25.9
Sample D Male 41.7
Superior colliculi
nTPM: 30.7
Samples: 4

Max nTPM: 37.3
Min nTPM: 23.8
Sample A Female 37.3
Sample B Female 23.8
Sample C Male 28.1
Sample D Male 33.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 29.7
Min nTPM: 27.8
Sample A Male 29.3
Sample B Male 29.0
Sample C Female 29.7
Sample D Female 27.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70429423 Antisense, RP_050614_01_F05, Mouse strain C57BL/6J (56 days, male) 2.3
74988453 Antisense, RP_060315_05_D08, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.