MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.3 nTPM
HPA:40.3 nTPM
GTEx:27.1 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:33.2 nTPM
Mouse:13.1 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
2586 Male, age 75, left hemisphere 39.1
1833 Male, age 53, unknown 37.1
1870 Female, age 42, unknown 37.0
2828 Female, age 72, unknown 37.0
1830 Male, age 51, unknown 36.7
2411 Female, age 72, unknown 36.0
2019 Male, age 18, unknown 35.7
2219 Male, age 76, both hemispheres 32.4
2666 Male, age 74, left hemisphere 31.2
1827 Male, age 72, unknown 30.7
Dorsal raphe nucleus
nTPM: 33.7
2750 Male, age 76, both hemispheres 40.0
1828 Male, age 53, unknown 34.0
2016 Female, age 72, unknown 33.5
2298 Female, age 72, unknown 30.9
2047 Male, age 72, unknown 30.0
Inferior colliculus
nTPM: 32.1
1848 Female, age 42, unknown 33.1
2849 Male, age 72, unknown 32.9
1890 Male, age 53, unknown 32.8
2097 Female, age 72, unknown 29.4
Median raphe nucleus
nTPM: 29.2
2220 Male, age 76, midline 29.2
Pedunculopontine tegmental nucleus
nTPM: 30.9
2334 Male, age 80, both hemispheres 32.0
1921 Female, age 85, both hemispheres 31.4
2338 Male, age 61, both hemispheres 29.5
Periaquaductal grey, anterior
nTPM: 32.2
2502 Female, age 75, unknown 33.6
1795 Male, age 51, unknown 31.9
1947 Male, age 18, unknown 31.2
Periaquaductal grey, dorsal
nTPM: 31.1
2464 Female, age 72, unknown 35.3
1831 Male, age 72, unknown 30.5
1840 Male, age 53, unknown 30.2
2850 Male, age 76, both hemispheres 28.2
Periaquaductal grey, lateral
nTPM: 31.6
2053 Male, age 18, unknown 33.7
2272 Male, age 74, both hemispheres 33.0
2140 Male, age 76, both hemispheres 28.2
Pretectal area
nTPM: 32.0
2667 Female, age 75, unknown 35.7
2316 Male, age 76, right hemisphere 35.2
2407 Male, age 75, both hemispheres 33.8
2273 Male, age 74, both hemispheres 33.1
2825 Male, age 18, unknown 32.7
1815 Male, age 53, unknown 32.4
1817 Female, age 42, unknown 31.3
2224 Female, age 72, unknown 31.1
2007 Male, age 72, unknown 30.4
1816 Male, age 51, unknown 28.0
1944 Female, age 72, unknown 27.9
Red nucleus
nTPM: 40.3
2227 Male, age 72, unknown 45.3
2769 Male, age 72, unknown 45.1
2823 Male, age 76, right hemisphere 44.4
1904 Male, age 53, unknown 42.2
2503 Female, age 72, unknown 41.4
1865 Male, age 51, unknown 41.0
1954 Female, age 42, unknown 40.2
2785 Male, age 18, unknown 39.7
1821 Female, age 72, unknown 39.2
2588 Male, age 74, left hemisphere 37.1
2584 Male, age 75, left hemisphere 34.7
2725 Female, age 75, unknown 33.8
Substantia nigra
nTPM: 31.3
2583 Male, age 75, right hemisphere 35.3
1851 Male, age 51, unknown 34.6
2590 Female, age 75, unknown 33.6
2699 Male, age 18, unknown 33.6
2665 Male, age 74, both hemispheres 31.3
1889 Female, age 72, unknown 31.2
2409 Female, age 72, unknown 29.3
1916 Female, age 42, unknown 28.7
1941 Male, age 53, unknown 28.3
2241 Male, age 72, unknown 27.5
Superior colliculus
nTPM: 34.0
1995 Male, age 72, unknown 41.5
1913 Female, age 42, unknown 41.1
1895 Male, age 76, right hemisphere 34.8
2664 Male, age 75, both hemispheres 34.7
1839 Male, age 51, unknown 33.9
1796 Male, age 53, unknown 32.4
2668 Female, age 75, unknown 31.3
2587 Male, age 74, left hemisphere 31.1
2087 Female, age 72, unknown 30.0
2261 Male, age 18, unknown 29.1
Ventral tegmental area
nTPM: 32.2
2410 Female, age 72, unknown 35.1
2223 Female, age 72, unknown 34.0
2021 Male, age 53, unknown 32.2
1942 Male, age 51, unknown 31.3
1915 Female, age 42, unknown 30.3
2218 Male, age 76, both hemispheres 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.1
Samples: 139

Max nTPM: 69.9
Min nTPM: 11.8
Std nTPM: 8.7
Median nTPM: 26.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 69.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 60.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 53.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 49.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 43.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 42.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 41.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 40.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 39.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 38.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.2
Pig sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 41.7
Min nTPM: 28.4
Sample A Female 41.7
Sample B Female 30.6
Sample C Male 29.4
Sample D Male 28.4
Periaqueductal gray
nTPM: 28.4
Samples: 3

Max nTPM: 30.1
Min nTPM: 25.9
Sample B Female 30.1
Sample C Male 29.1
Sample D Male 25.9
Substantia nigra
nTPM: 33.1
Samples: 4

Max nTPM: 42.5
Min nTPM: 27.3
Sample A Female 29.7
Sample B Female 27.3
Sample C Male 33.0
Sample D Male 42.5
Superior colliculi
nTPM: 29.1
Samples: 4

Max nTPM: 33.4
Min nTPM: 22.6
Sample A Female 29.7
Sample B Female 22.6
Sample C Male 30.8
Sample D Male 33.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.7
Min nTPM: 10.3
Sample A Male 15.7
Sample B Male 10.3
Sample C Female 12.9
Sample D Female 13.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
75651228 Antisense, RP_060518_01_D06, Mouse strain C57BL/6J (56 days, male) 6.3
68203441 Antisense, RP_041018_01_B10, Mouse strain C57BL/6J (56 days, male) 6.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.