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ATP5IF1
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  • ATP5IF1
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:199.6 nTPM
HPA:125.0 nTPM
GTEx:199.6 nTPM
FANTOM5:638.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA027999
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 125.0
overview
Male, age 65
Small intestine sample 232
nTPM: 153.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 125.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 118.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 102

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 199.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 199.6
Samples: 187

Max nTPM: 439.9
Min nTPM: 81.8
Std nTPM: 74.8
Median nTPM: 180.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 439.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 379.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 361.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 358.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 352.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 347.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 343.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 338.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 333.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 325.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 324.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 323.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 321.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 314.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 314.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 313.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 313.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 312.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 310.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 310.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 310.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 308.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 307.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 306.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 305.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 304.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 304.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 303.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 302.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 287.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 286.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 286.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 286.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 282.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 280.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 279.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 278.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 278.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 277.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 272.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 271.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 270.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 267.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 267.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 263.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 263.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 262.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 257.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 256.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 252.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 246.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 244.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 242.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 240.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 239.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 234.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 233.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 232.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 231.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 230.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 226.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 225.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 225.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 223.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 223.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 222.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 222.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 221.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 220.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 218.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 218.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 215.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 212.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 210.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 210.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 209.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 207.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 202.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 200.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 200.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 200.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 198.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 198.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 196.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 194.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 192.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 190.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 189.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 188.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 186.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 183.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 183.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 181.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 180.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 179.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 177.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 175.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 175.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 175.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 174.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 173.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 170.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 169.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 169.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 168.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 167.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 164.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 160.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 160.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 159.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 159.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 159.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 158.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 156.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 156.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 155.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 155.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 154.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 153.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 153.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 152.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 152.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 151.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 151.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 149.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 149.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 147.7
GTEX-1192X-2526-SM-59868 50-59 years, male 146.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 145.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 144.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 144.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 144.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 143.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 142.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 142.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 142.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 137.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 137.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 137.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 136.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 134.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 134.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 134.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 134.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 134.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 133.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 133.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 133.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 131.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 129.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 129.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 127.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 127.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 126.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 126.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 126.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 125.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 125.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 125.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 124.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 124.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 123.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 123.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 121.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 121.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 120.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 119.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 117.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 116.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 116.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 115.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 114.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 113.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 112.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 112.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 112.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 108.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 107.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 104.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 104.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 103.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 102.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 97.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 92.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 92.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 89.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 81.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 638.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 638.4
FF:10024-101D6 15,40,85 years, mixed 638.4

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