MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:83.8 nTPM
HPA:83.8 nTPM
GTEx:81.3 nTPM
FANTOM5:126.3 Scaled Tags Per Million
Pig:25.1 nTPM
Mouse:14.5 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.7
2828 Female, age 72, unknown 86.2
2411 Female, age 72, unknown 82.9
2019 Male, age 18, unknown 78.6
1833 Male, age 53, unknown 77.7
1870 Female, age 42, unknown 77.3
1830 Male, age 51, unknown 75.3
2586 Male, age 75, left hemisphere 75.3
1827 Male, age 72, unknown 70.8
2219 Male, age 76, both hemispheres 68.7
2666 Male, age 74, left hemisphere 63.8
Dorsal raphe nucleus
nTPM: 63.7
2750 Male, age 76, both hemispheres 72.6
2016 Female, age 72, unknown 69.3
1828 Male, age 53, unknown 66.7
2047 Male, age 72, unknown 56.6
2298 Female, age 72, unknown 53.3
Inferior colliculus
nTPM: 65.4
2849 Male, age 72, unknown 71.0
1848 Female, age 42, unknown 69.4
1890 Male, age 53, unknown 63.8
2097 Female, age 72, unknown 57.5
Median raphe nucleus
nTPM: 56.4
2220 Male, age 76, midline 56.4
Pedunculopontine tegmental nucleus
nTPM: 62.0
1921 Female, age 85, both hemispheres 67.2
2334 Male, age 80, both hemispheres 63.4
2338 Male, age 61, both hemispheres 55.4
Periaquaductal grey, anterior
nTPM: 70.9
2502 Female, age 75, unknown 84.2
1795 Male, age 51, unknown 69.3
1947 Male, age 18, unknown 59.2
Periaquaductal grey, dorsal
nTPM: 62.7
2464 Female, age 72, unknown 75.8
1831 Male, age 72, unknown 61.2
1840 Male, age 53, unknown 59.5
2850 Male, age 76, both hemispheres 54.1
Periaquaductal grey, lateral
nTPM: 67.1
2053 Male, age 18, unknown 72.2
2140 Male, age 76, both hemispheres 66.7
2272 Male, age 74, both hemispheres 62.5
Pretectal area
nTPM: 72.6
2316 Male, age 76, right hemisphere 93.9
2667 Female, age 75, unknown 92.7
1815 Male, age 53, unknown 75.6
1944 Female, age 72, unknown 72.0
1816 Male, age 51, unknown 69.0
2007 Male, age 72, unknown 68.3
2407 Male, age 75, both hemispheres 68.2
1817 Female, age 42, unknown 67.5
2825 Male, age 18, unknown 66.2
2273 Male, age 74, both hemispheres 63.6
2224 Female, age 72, unknown 61.4
Red nucleus
nTPM: 83.8
2823 Male, age 76, right hemisphere 98.6
2769 Male, age 72, unknown 93.2
2588 Male, age 74, left hemisphere 93.1
2227 Male, age 72, unknown 91.7
2503 Female, age 72, unknown 90.4
1904 Male, age 53, unknown 90.3
2785 Male, age 18, unknown 82.3
1865 Male, age 51, unknown 81.5
1954 Female, age 42, unknown 79.2
1821 Female, age 72, unknown 77.4
2584 Male, age 75, left hemisphere 67.6
2725 Female, age 75, unknown 60.7
Substantia nigra
nTPM: 65.2
2699 Male, age 18, unknown 78.4
1851 Male, age 51, unknown 69.8
2583 Male, age 75, right hemisphere 69.4
2665 Male, age 74, both hemispheres 68.4
2409 Female, age 72, unknown 66.9
1889 Female, age 72, unknown 66.1
2590 Female, age 75, unknown 61.7
1916 Female, age 42, unknown 60.6
1941 Male, age 53, unknown 55.5
2241 Male, age 72, unknown 55.1
Superior colliculus
nTPM: 74.1
1995 Male, age 72, unknown 84.2
1913 Female, age 42, unknown 83.6
1839 Male, age 51, unknown 75.6
2664 Male, age 75, both hemispheres 73.6
1895 Male, age 76, right hemisphere 73.1
1796 Male, age 53, unknown 72.4
2087 Female, age 72, unknown 71.4
2261 Male, age 18, unknown 70.1
2668 Female, age 75, unknown 69.3
2587 Male, age 74, left hemisphere 68.2
Ventral tegmental area
nTPM: 65.8
2410 Female, age 72, unknown 75.1
2021 Male, age 53, unknown 67.3
2223 Female, age 72, unknown 66.0
1915 Female, age 42, unknown 63.3
1942 Male, age 51, unknown 62.8
2218 Male, age 76, both hemispheres 60.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.3
Samples: 139

Max nTPM: 159.4
Min nTPM: 22.9
Std nTPM: 25.8
Median nTPM: 79.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 159.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 159.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 155.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 134.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 133.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 132.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 131.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 127.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 125.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 124.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 123.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 126.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.3
FF:10158-103A5 76 years, female 126.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.1
Pig sample Sample description nTPM
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 47.9
Min nTPM: 17.4
Sample A Female 47.9
Sample B Female 17.4
Sample C Male 17.4
Sample D Male 17.8
Periaqueductal gray
nTPM: 14.6
Samples: 3

Max nTPM: 15.3
Min nTPM: 14.2
Sample B Female 15.3
Sample C Male 14.2
Sample D Male 14.4
Substantia nigra
nTPM: 24.7
Samples: 4

Max nTPM: 39.3
Min nTPM: 14.8
Sample A Female 20.1
Sample B Female 14.8
Sample C Male 24.6
Sample D Male 39.3
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 24.4
Min nTPM: 10.2
Sample A Female 19.6
Sample B Female 10.2
Sample C Male 24.2
Sample D Male 24.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.7
Sample A Male 14.9
Sample B Male 14.8
Sample C Female 15.4
Sample D Female 12.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
69735018 Antisense, RP_050503_01_H06, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.