MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:90.5 nTPM
HPA:90.5 nTPM
GTEx:75.6 nTPM
FANTOM5:374.1 Scaled Tags Per Million
Mouse:45.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 90.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.3
2586 Male, age 75, left hemisphere 99.7
2666 Male, age 74, left hemisphere 89.8
2019 Male, age 18, unknown 87.9
2828 Female, age 72, unknown 81.5
1830 Male, age 51, unknown 79.1
2411 Female, age 72, unknown 75.8
1833 Male, age 53, unknown 73.9
1870 Female, age 42, unknown 71.9
1827 Male, age 72, unknown 69.1
2219 Male, age 76, both hemispheres 54.0
Dorsal raphe nucleus
nTPM: 63.8
2750 Male, age 76, both hemispheres 82.7
1828 Male, age 53, unknown 67.0
2016 Female, age 72, unknown 66.1
2047 Male, age 72, unknown 54.2
2298 Female, age 72, unknown 49.2
Inferior colliculus
nTPM: 64.7
1890 Male, age 53, unknown 67.9
1848 Female, age 42, unknown 65.5
2097 Female, age 72, unknown 65.1
2849 Male, age 72, unknown 60.2
Median raphe nucleus
nTPM: 50.4
2220 Male, age 76, midline 50.4
Pedunculopontine tegmental nucleus
nTPM: 56.0
2334 Male, age 80, both hemispheres 62.5
1921 Female, age 85, both hemispheres 62.4
2338 Male, age 61, both hemispheres 43.1
Periaquaductal grey, anterior
nTPM: 61.5
2502 Female, age 75, unknown 64.3
1947 Male, age 18, unknown 61.0
1795 Male, age 51, unknown 59.1
Periaquaductal grey, dorsal
nTPM: 56.2
1831 Male, age 72, unknown 67.8
2464 Female, age 72, unknown 62.4
1840 Male, age 53, unknown 51.4
2850 Male, age 76, both hemispheres 43.1
Periaquaductal grey, lateral
nTPM: 54.2
2053 Male, age 18, unknown 63.5
2272 Male, age 74, both hemispheres 53.0
2140 Male, age 76, both hemispheres 46.2
Pretectal area
nTPM: 69.3
1815 Male, age 53, unknown 82.6
2007 Male, age 72, unknown 80.1
1817 Female, age 42, unknown 79.4
2316 Male, age 76, right hemisphere 78.6
2407 Male, age 75, both hemispheres 74.8
1816 Male, age 51, unknown 70.4
1944 Female, age 72, unknown 68.0
2667 Female, age 75, unknown 65.8
2825 Male, age 18, unknown 59.7
2273 Male, age 74, both hemispheres 55.3
2224 Female, age 72, unknown 47.8
Red nucleus
nTPM: 90.5
2823 Male, age 76, right hemisphere 104.1
2588 Male, age 74, left hemisphere 98.7
2785 Male, age 18, unknown 94.5
1821 Female, age 72, unknown 93.8
2584 Male, age 75, left hemisphere 92.8
2227 Male, age 72, unknown 90.8
1904 Male, age 53, unknown 89.9
1865 Male, age 51, unknown 89.4
2769 Male, age 72, unknown 88.3
2503 Female, age 72, unknown 88.1
1954 Female, age 42, unknown 85.2
2725 Female, age 75, unknown 70.5
Substantia nigra
nTPM: 68.3
2583 Male, age 75, right hemisphere 78.9
1889 Female, age 72, unknown 75.0
1851 Male, age 51, unknown 74.3
2590 Female, age 75, unknown 68.9
2665 Male, age 74, both hemispheres 67.8
2409 Female, age 72, unknown 67.5
1916 Female, age 42, unknown 66.1
2699 Male, age 18, unknown 65.3
1941 Male, age 53, unknown 62.0
2241 Male, age 72, unknown 57.7
Superior colliculus
nTPM: 79.3
2668 Female, age 75, unknown 98.2
1995 Male, age 72, unknown 90.4
2664 Male, age 75, both hemispheres 88.4
1895 Male, age 76, right hemisphere 82.1
1913 Female, age 42, unknown 81.9
1839 Male, age 51, unknown 75.9
2087 Female, age 72, unknown 71.6
2587 Male, age 74, left hemisphere 70.7
1796 Male, age 53, unknown 67.7
2261 Male, age 18, unknown 66.5
Ventral tegmental area
nTPM: 66.2
2410 Female, age 72, unknown 78.9
2021 Male, age 53, unknown 69.1
2223 Female, age 72, unknown 65.8
1915 Female, age 42, unknown 65.0
1942 Male, age 51, unknown 61.8
2218 Male, age 76, both hemispheres 56.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.6
Samples: 139

Max nTPM: 191.5
Min nTPM: 41.2
Std nTPM: 27.1
Median nTPM: 68.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 191.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 172.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 165.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 152.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 151.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 142.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 133.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 128.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 116.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 115.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 113.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 374.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 374.1
FF:10158-103A5 76 years, female 374.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.5
Samples: 4

Max nTPM: 48.9
Min nTPM: 43.5
Sample A Male 44.7
Sample B Male 45.0
Sample C Female 48.9
Sample D Female 43.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69874030 Antisense, RP_050512_02_E06, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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