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SLC6A8
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:76.9 nTPM
HPA:76.9 nTPM
FANTOM5:170.9 Scaled Tags Per Million
Allen mouse:1.4 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 76.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 72.4
2188 Female, age 91, both hemispheres 80.6
2090 Male, age 80, both hemispheres 75.1
2301 Female, age 85, both hemispheres 71.0
1984 Male, age 76, both hemispheres 62.7
Dorsal cochlear nucleus
nTPM: 73.3
2802 Male, age 74, right hemisphere 78.6
2378 Male, age 80, both hemispheres 74.9
2058 Male, age 76, both hemispheres 73.7
2187 Female, age 91, both hemispheres 72.5
2370 Male, age 61, both hemispheres 67.0
Dorsal tegmental nucleus
nTPM: 65.4
2083 Male, age 80, both hemispheres 77.9
2358 Male, age 61, both hemispheres 62.0
2326 Male, age 74, both hemispheres 61.1
1936 Male, age 76, left hemisphere 60.5
Dorsolateral tegmental area
nTPM: 62.6
2751 Female, age 85, both hemispheres 76.7
2654 Male, age 80, both hemispheres 76.4
2141 Male, age 76, both hemispheres 59.8
2360 Male, age 74, both hemispheres 53.3
2337 Male, age 61, both hemispheres 46.7
Kolliker-Fuse nucleus
nTPM: 70.8
2793 Female, age 91, left hemisphere 86.1
2163 Male, age 80, both hemispheres 63.2
2315 Male, age 76, right hemisphere 63.2
Lateral lemniscal nuclei
nTPM: 75.2
2320 Female, age 91, left hemisphere 83.2
2036 Male, age 80, both hemispheres 82.8
2746 Female, age 85, left hemisphere 77.0
2169 Male, age 76, both hemispheres 68.0
2453 Male, age 74, right hemisphere 65.1
Lateral parabrachial nucleus
nTPM: 73.1
2792 Male, age 76, both hemispheres 90.0
2013 Male, age 80, both hemispheres 77.2
2139 Female, age 85, right hemisphere 66.2
2790 Male, age 61, both hemispheres 58.9
Lateral vestibular nucleus
nTPM: 68.9
2184 Male, age 76, both hemispheres 73.7
2311 Male, age 80, both hemispheres 64.2
Locus coeruleus
nTPM: 47.9
2162 Male, age 80, both hemispheres 55.4
2317 Female, age 72, unknown 52.1
2123 Female, age 91, both hemispheres 50.8
2720 Male, age 74, both hemispheres 47.8
1980 Male, age 76, both hemispheres 45.5
2014 Male, age 55, unknown 44.7
2788 Male, age 74, unknown 38.9
Medial olivary nucleus
nTPM: 74.3
2138 Female, age 91, both hemispheres 82.2
1962 Male, age 76, both hemispheres 79.8
2851 Male, age 80, both hemispheres 70.4
1943 Male, age 61, both hemispheres 64.9
Medial parabrachial nucleus
nTPM: 70.3
2463 Female, age 85, right hemisphere 80.8
2170 Female, age 91, both hemispheres 75.1
2786 Male, age 76, both hemispheres 73.2
2854 Male, age 80, both hemispheres 64.8
2156 Male, age 61, both hemispheres 57.5
Medial periolivary nuclei
nTPM: 71.0
2081 Male, age 80, both hemispheres 86.5
2458 Female, age 91, both hemispheres 72.0
2063 Male, age 76, both hemispheres 71.2
2791 Male, age 74, right hemisphere 67.3
2171 Female, age 85, both hemispheres 58.1
Motor facial nucleus
nTPM: 69.3
2126 Male, age 61, both hemispheres 76.4
2795 Female, age 91, both hemispheres 72.2
2062 Male, age 76, both hemispheres 70.6
2327 Male, age 80, both hemispheres 68.2
2697 Female, age 85, both hemispheres 65.5
2365 Male, age 74, right hemisphere 62.8
Motor trigeminal nucleus
nTPM: 70.5
2321 Female, age 91, both hemispheres 77.2
2560 Male, age 74, both hemispheres 74.7
2079 Male, age 80, both hemispheres 73.5
2309 Male, age 76, both hemispheres 71.2
2335 Male, age 61, both hemispheres 56.2
Nuclei of the trapezoid body
nTPM: 71.1
2368 Female, age 91, both hemispheres 78.2
2166 Male, age 80, both hemispheres 75.4
2159 Male, age 61, both hemispheres 71.2
1983 Male, age 76, both hemispheres 68.6
2735 Female, age 85, both hemispheres 62.2
Paramedian reticular nucleus
nTPM: 68.0
2057 Male, age 80, both hemispheres 74.2
2050 Female, age 85, both hemispheres 73.4
2052 Male, age 76, both hemispheres 64.0
2313 Male, age 61, both hemispheres 60.5
Pontine nuclei
nTPM: 75.1
2319 Female, age 91, both hemispheres 84.1
2115 Male, age 80, left hemisphere 83.2
1968 Male, age 76, left hemisphere 78.4
2787 Female, age 85, both hemispheres 73.2
1863 Male, age 55, unknown 72.6
2454 Male, age 74, left hemisphere 72.5
2727 Male, age 61, right hemisphere 69.4
2109 Female, age 72, unknown 67.8
Pontine raphe nucleus
nTPM: 65.1
2122 Female, age 85, midline 66.8
2853 Male, age 76, midline 63.4
Posteroventral cochlear nucleus
nTPM: 73.9
2135 Female, age 91, both hemispheres 94.6
2070 Male, age 76, both hemispheres 76.4
2341 Male, age 80, both hemispheres 71.4
2752 Female, age 85, both hemispheres 65.2
2371 Male, age 61, both hemispheres 61.8
Principal sensory trigeminal nucleus
nTPM: 71.8
2367 Female, age 91, left hemisphere 84.6
2158 Male, age 61, both hemispheres 69.5
2008 Male, age 80, left hemisphere 68.2
2324 Male, age 76, both hemispheres 64.9
Reticular pontine nucleus, caudal
nTPM: 75.8
2457 Female, age 91, both hemispheres 80.2
2092 Male, age 76, both hemispheres 78.1
2332 Male, age 80, right hemisphere 72.6
2559 Male, age 74, both hemispheres 72.3
Reticular pontine nucleus, oral
nTPM: 76.9
2366 Female, age 91, both hemispheres 88.8
2012 Female, age 85, both hemispheres 75.0
1939 Male, age 80, both hemispheres 74.8
2167 Male, age 76, both hemispheres 74.1
2361 Male, age 74, both hemispheres 71.8
Reticulotegmental nucleus
nTPM: 68.2
2452 Male, age 74, both hemispheres 73.9
2333 Male, age 80, both hemispheres 72.0
2322 Female, age 91, both hemispheres 70.1
2325 Male, age 76, both hemispheres 56.9
Spinal trigeminal nucleus, oral
nTPM: 64.2
1978 Male, age 76, both hemispheres 67.5
2164 Male, age 80, both hemispheres 66.9
2737 Female, age 85, both hemispheres 58.2
Subcoeruleus area
nTPM: 69.8
2369 Female, age 85, left hemisphere 84.0
2089 Male, age 76, left hemisphere 77.4
1958 Male, age 80, both hemispheres 65.3
2451 Male, age 74, both hemispheres 64.8
2323 Female, age 91, left hemisphere 57.6
Superior olive
nTPM: 72.5
2020 Male, age 76, both hemispheres 80.3
2561 Female, age 91, both hemispheres 78.0
2329 Male, age 80, right hemisphere 72.9
1875 Female, age 85, both hemispheres 69.0
2364 Male, age 74, right hemisphere 62.3
Superior vestibular nucleus
nTPM: 60.9
2061 Male, age 76, both hemispheres 66.3
2015 Male, age 80, both hemispheres 64.2
2383 Male, age 74, both hemispheres 52.1
Ventral periolivary nuclei
nTPM: 69.5
2023 Male, age 76, both hemispheres 85.0
2794 Female, age 91, left hemisphere 66.8
2165 Male, age 80, both hemispheres 66.2
2130 Female, age 85, both hemispheres 59.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 69.3
2456 Female, age 91, both hemispheres 83.8
1959 Male, age 76, both hemispheres 74.2
2161 Male, age 80, both hemispheres 72.8
2840 Female, age 85, both hemispheres 69.8
2449 Male, age 74, both hemispheres 63.5
2359 Male, age 61, both hemispheres 52.0

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 170.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 170.9
FF:10165-103B3 76 years, female 181.5
FF:10182-103D2 60 years, female 160.4
Pons
Scaled Tags Per Million: 109.9
FF:10033-101E6 18-54 years, mixed 109.9

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.4
69874030 Antisense, RP_050512_02_E06, Mouse strain C57BL/6J (56 days, male) 1.4

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