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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:18.5 nTPM
HPA:18.5 nTPM
GTEx:53.2 nTPM
FANTOM5:28.9 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:8.7 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 18.5
Sample id Sample description nTPM
Amygdala
nTPM: 15.5
2695 Female, age 67, right hemisphere 17.4
1987 Female, age 91, left hemisphere 16.7
2814 Male, age 76, right hemisphere 15.5
2517 Female, age 94, left hemisphere 14.0
2514 Male, age 75, right hemisphere 13.9
Basal amygdala
nTPM: 16.0
2827 Female, age 67, right hemisphere 22.5
2609 Male, age 75, right hemisphere 20.6
1955 Male, age 76, both hemispheres 16.7
2243 Female, age 91, right hemisphere 14.0
2685 Female, age 94, left hemisphere 14.0
2110 Male, age 80, left hemisphere 8.1
Central amygdala
nTPM: 18.5
2515 Male, age 75, right hemisphere 25.3
2701 Female, age 91, right hemisphere 20.3
2826 Female, age 94, left hemisphere 19.5
1905 Male, age 76, both hemispheres 16.0
2239 Male, age 80, left hemisphere 11.5
Corticomedial amygdala
nTPM: 14.0
2535 Female, age 67, right hemisphere 17.9
2428 Male, age 75, right hemisphere 16.1
2829 Male, age 80, left hemisphere 14.8
2240 Male, age 76, both hemispheres 13.0
2242 Female, age 91, right hemisphere 12.7
2429 Female, age 94, left hemisphere 9.7
Lateral amygdala
nTPM: 16.0
2830 Female, age 67, right hemisphere 19.0
2255 Female, age 91, right hemisphere 18.1
2256 Male, age 80, left hemisphere 16.2
2516 Male, age 75, right hemisphere 15.7
2534 Female, age 94, left hemisphere 13.9
1883 Male, age 76, both hemispheres 13.4
Stria terminalis, bed nucleus
nTPM: 11.5
1974 Female, age 91, both hemispheres 13.3
2201 Male, age 74, unknown 13.2
2486 Female, age 94, both hemispheres 8.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 53.2
Samples: 152

Max nTPM: 130.2
Min nTPM: 4.6
Std nTPM: 23.0
Median nTPM: 50.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 130.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 118.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 109.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 106.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 103.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 96.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 96.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 95.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 89.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 88.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 88.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 87.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 86.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 83.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 81.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 80.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 78.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 76.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 75.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 75.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 73.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 73.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 73.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 72.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 71.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 71.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 71.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 70.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 68.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 67.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 67.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 66.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 66.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 65.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 65.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 65.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 65.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 65.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 65.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 64.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 64.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 63.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 63.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 63.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 63.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 62.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 62.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 61.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 61.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 61.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 60.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 59.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 59.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 59.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 58.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 58.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 57.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 57.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 57.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 55.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 55.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 54.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 54.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 53.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 53.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 52.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 52.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 52.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 52.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 52.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 50.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 50.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 50.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 50.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 50.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 50.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 49.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 48.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 48.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 47.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 47.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 47.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 46.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 46.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 45.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 45.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 45.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 44.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 44.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 44.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 43.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 42.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 42.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 41.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 41.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 40.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 40.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 40.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 39.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 39.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 39.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 38.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 38.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 37.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 37.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 37.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 36.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 36.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 36.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 35.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 35.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 34.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 33.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 33.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 33.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 32.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 32.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 32.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 32.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 32.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 31.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 31.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 31.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 30.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 30.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 29.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 28.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 28.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 28.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 27.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 27.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 27.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 27.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 25.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 24.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 23.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 19.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 18.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 18.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 18.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 17.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 17.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 15.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 12.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 28.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 28.9
FF:10151-102I7 76 years, female 28.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.4
Pig sample Sample description nTPM
Amygdala
nTPM: 30.5
Samples: 4

Max nTPM: 39.9
Min nTPM: 23.1
Sample A Female 31.5
Sample B Female 27.3
Sample C Male 23.1
Sample D Male 39.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 8.7
Samples: 4

Max nTPM: 11.1
Min nTPM: 6.0
Sample A Male 8.9
Sample B Male 6.0
Sample C Female 11.1
Sample D Female 8.7

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